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  1. 1000Bulls mapping pipeline at ABGC
  2. ABGC Journal Club
  3. ABGC bioinformatics
  4. ABGC lab
  5. ABGC modules
  6. ABGC secretariat
  7. ABGSA
  8. ANGSD 0.614
  9. About ABGC
  10. Access Policy
  11. Allpathslg 48961
  12. Allpathslg 51910
  13. Animal Breeding and Genetics
  14. Anunna
  15. Architecture of the HPC
  16. Array jobs
  17. AsAn
  18. Assemble mitochondrial genomes from short read data
  19. Assembly & Annotation
  20. Augustus 2.7
  21. B4F cluster
  22. BCData
  23. BCM on Anunna
  24. BCPlatforms
  25. BLAST
  26. Bedtools2.18
  27. Bioinformatics protocols ABG Chairgroup
  28. Bioinformatics tips tricks workflows
  29. Bioinformatics topics at ABG Chairgroup
  30. Blat v35
  31. Bowtie1 v1.0.0
  32. Bowtie2 v2.2.1
  33. Bwa 5.9
  34. Bwa 7.5
  35. Calculate corrected theta from resequencing data
  36. Canu
  37. Cegma 2.4
  38. Checkpointing
  39. Command line tricks for manipulating fastq
  40. Computer cluster
  41. Conda for teaching
  42. Control R environment using modules
  43. Convert between MediaWiki and other formats
  44. Convert fastq to fasta
  45. Courses
  46. Create shortcut log-in command
  47. Creating sbatch script
  48. Cuda
  49. Cufflinks
  50. DE expression
  51. Environment Modules
  52. Events
  53. Exonerate 2.2.0
  54. Extract noncall snps from soy
  55. Fastq
  56. File transfer
  57. Filesystems
  58. Geneid 1.4.4
  59. Genetics and Genomics
  60. Genewise 2.2.3
  61. Genomics Journal Club
  62. Get my bill
  63. Globally installed software
  64. HPC management
  65. Hadoop
  66. History of the Cluster
  67. Hmmer 3.1
  68. Installation by users
  69. Installing R packages locally
  70. Installing WRF and WPS
  71. Issues asreml
  72. JBrowse
  73. Jellyfish 2.1.1
  74. JupyterHub with GPU
  75. List of users
  76. Log in to Anunna
  77. Lx6 and Lx7 compute nodes
  78. MAFFT 7.130
  79. MPI on B4F cluster
  80. Mailinglist
  81. Main Page
  82. Maintenance and Management
  83. Maker 2.2.8
  84. Maker protocols Pmajor
  85. Making slices from BAM files
  86. Manual GitLab
  87. Mapping Pair-end reads with Stampy
  88. Mapping and variant calling pipeline
  89. Mapping reads with Mosaik
  90. Matlab
  91. Meetings
  92. Migration from ESG HPC
  93. Monday Genome Meeting
  94. Monitoring job execution
  95. Muscle 3.8.31
  96. Nanopore assembly and variant calling
  97. New page
  98. Newpage
  99. Node usage graph
  100. Obfuscating runs
  101. Old binaries
  102. Parallel R code on SLURM
  103. Plink 1.07
  104. Plink 1.9
  105. Population mapping pipeline
  106. Population structural variant calling pipeline
  107. Population variant calling pipeline
  108. Provean 1.1.3
  109. Provean Sus scrofa
  110. Quantitative genetics
  111. Quantitative genetics protocols ABG Chairgroup
  112. RAxML8.0.0
  113. RNA-seq analysis
  114. RepeatMasker 4.0.3
  115. RepeatModeler 1.0.7
  116. Reservations
  117. Roadmap
  118. Running Snakemake pipelines
  119. Running scripts on a fixed timeschedule (cron)
  120. SACCT
  121. SLURM Compare
  122. SSH tunnel to a certain node
  123. Samtools v0.1.12a
  124. Samtools v0.1.19
  125. Services
  126. Setting TMPDIR
  127. Setting local variables
  128. Setting up Python virtualenv
  129. Setup Printers on Ubuntu Machines
  130. Setup Stampy on your Linux/Unix machine
  131. Setup Stampy on your Linux/Unix machine and mapping Pair-end reads
  132. Setup Stampy on your machine
  133. Setup printer on Ubuntu Machines
  134. Shared folders
  135. Short read mapping pipeline pig
  136. Single Cell preprocessing pipeline
  137. Snap
  138. Soapdenovo2 r240
  139. Spark
  140. Sra toolkit 2.3.4
  141. Ssh without password
  142. Submit job with qsub
  143. Super computer
  144. Tariffs
  145. TopHat 2.0.11
  146. Trinity r20131110
  147. Using Slurm
  148. Using conda to install a new kernel into your notebook
  149. Using environment modules
  150. Variant annotation tutorial
  151. Virtual environment Python 3.4 or higher
  152. Wgs assembler 8.1
  153. Whole genome alignment pipeline

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