Soapdenovo2 r240

SOAPdenovo2 is a popular genome assembler.

Module file

The module file can be found in this location:

 /cm/shared/modulefiles/SHARED/

<source lang='tcl'>#%Module1.0#######################################################################

1. 1. SOAPdenovo2 r240 modulefile

proc ModulesHelp { } {

       puts stderr "\tAdds SOAPdenovo2 r240 to your environment"

}

module-whatis "Adds SOAPdenovo2 r240 to your environment"

set soapdenovo2_r240_root /cm/shared/apps/SHARED/SOAPdenovo2/SOAPdenovo2-bin-LINUX-generic-r240/

prepend-path PATH $soapdenovo2_r240_root

</source>

Installation details

The pre-compiled binaries were downloaded from SourceForge on 15-03-2014:

  http://sourceforge.net/projects/soapdenovo2/files/SOAPdenovo2/

This included the GapCloser software (v1.12), ErrorCorrection (v0.04), and SOAPec (v2.01, includes Corrector_AR, Corrector_HA, KmerFreq_AR and KmerFreq_HA binaries).

See also

• Globally installed software
• ABGC specific modules

External links

• SOAPdenovo2 home page
• SourceForge link for SOAPdenovo2
• SourceForge link for GapCloser

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