Bowtie1 v1.0.0
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Bowtie is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep its memory footprint small: typically about 2.2 GB for the human genome (2.9 GB for paired-end).
Module file
The module file can be found in this location:
/cm/shared/modulefiles/SHARED/
<source lang='tcl'>
- %Module1.0#######################################################################
- bowtie1-1.0.0 modulefile
proc ModulesHelp { } {
puts stderr "\tAdds bowtie1-1.0.0 to your environment"
}
module-whatis "Adds bowtie1-1.0.0 to your environment"
set bowtie1_1_0_0_root /cm/shared/apps/SHARED/bowtie/bowtie-1.0.0/
prepend-path PATH $bowtie1_1_0_0_root
</source>
Installation details
The pre-compiled binaries were downloaded from SourceForge on 15-03-2014:
http://sourceforge.net/projects/bowtie-bio/files/bowtie/1.0.0/