User contributions for Megen002
Jump to navigation
Jump to search
2 March 2020
- 18:5118:51, 2 March 2020 diff hist −55 Main Page →Using Anunna
- 18:5018:50, 2 March 2020 diff hist +55 Main Page →Using Anunna
- 18:4918:49, 2 March 2020 diff hist +22 N New page Created page with "Now here is some stuff" current
7 June 2017
- 16:2616:26, 7 June 2017 diff hist +6 Creating sbatch script →receiving mailed updates
- 16:2516:25, 7 June 2017 diff hist −1 Creating sbatch script →time limit
- 16:2416:24, 7 June 2017 diff hist 0 Creating sbatch script →output (stderr,stdout) directed to file
- 16:2216:22, 7 June 2017 diff hist +246 Creating sbatch script →Explanation of used SBATCH parameters
- 16:1716:17, 7 June 2017 diff hist +203 Creating sbatch script No edit summary
- 16:1216:12, 7 June 2017 diff hist −5,201 Using Slurm →Batch script
- 16:1216:12, 7 June 2017 diff hist +5,202 Creating sbatch script No edit summary
- 15:0615:06, 7 June 2017 diff hist −3 Creating sbatch script No edit summary
- 15:0615:06, 7 June 2017 diff hist +741 N Creating sbatch script Created page with "A skeletion Slurm script: <source lang='bash'> #-----------------------------Mail address----------------------------- #SBATCH --mail-user= #SBATCH --mail-type=ALL #-------..."
- 15:0115:01, 7 June 2017 diff hist +68 Using Slurm →Batch script
- 14:5314:53, 7 June 2017 diff hist +9 Using Slurm →Submitting jobs: sbatch
- 14:4514:45, 7 June 2017 diff hist +48 List of users →Alumni current
- 14:4514:45, 7 June 2017 diff hist −48 List of users →Active users
- 14:4214:42, 7 June 2017 diff hist +23 User:Megen002 No edit summary current
16 December 2016
- 15:0315:03, 16 December 2016 diff hist +7 JBrowse →Install JBrowse
- 14:5614:56, 16 December 2016 diff hist +59 JBrowse →Typical commands used to set up a JBrowse
- 14:1314:13, 16 December 2016 diff hist +19 JBrowse →Install JBrowse
- 14:1314:13, 16 December 2016 diff hist +349 JBrowse →Install JBrowse
- 14:0814:08, 16 December 2016 diff hist +18 JBrowse →Install JBrowse
22 January 2016
- 10:5810:58, 22 January 2016 diff hist −2 Virtual environment Python 3.4 or higher No edit summary
- 10:5710:57, 22 January 2016 diff hist +26 Virtual environment Python 3.4 or higher →activating a virtual environment
- 10:5610:56, 22 January 2016 diff hist +216 Virtual environment Python 3.4 or higher →activating a virtual environment
- 10:5110:51, 22 January 2016 diff hist +117 Main Page →Installation of software by users
- 10:5010:50, 22 January 2016 diff hist −2 Virtual environment Python 3.4 or higher →External links
- 10:5010:50, 22 January 2016 diff hist +25 Virtual environment Python 3.4 or higher →External links
- 10:4910:49, 22 January 2016 diff hist −624 Virtual environment Python 3.4 or higher No edit summary
- 10:3910:39, 22 January 2016 diff hist +125 Virtual environment Python 3.4 or higher No edit summary
- 10:3710:37, 22 January 2016 diff hist +12 Virtual environment Python 3.4 or higher No edit summary
- 10:3610:36, 22 January 2016 diff hist +218 Virtual environment Python 3.4 or higher No edit summary
- 10:2910:29, 22 January 2016 diff hist −668 Virtual environment Python 3.4 or higher No edit summary
- 10:0710:07, 22 January 2016 diff hist +4,620 N Virtual environment Python 3.4 or higher Created page with "With many Python packages available, which are often in conflict or requiring different versions depending on application, installing and controlling packages and versions is..."
- 09:5709:57, 22 January 2016 diff hist +211 Setting up Python virtualenv No edit summary
10 December 2015
- 15:4215:42, 10 December 2015 diff hist +48 List of users →Alumni
- 15:4215:42, 10 December 2015 diff hist −48 List of users →Active users
27 March 2015
- 00:3300:33, 27 March 2015 diff hist +1 Main Page →Access Policy
- 00:2600:26, 27 March 2015 diff hist +197 Main Page →Access Policy
- 00:2400:24, 27 March 2015 diff hist −166 Main Page →Access Policy
- 00:0800:08, 27 March 2015 diff hist −157 Manual GitLab →Example of local commands to execute
- 00:0300:03, 27 March 2015 diff hist +87 Manual GitLab No edit summary
26 March 2015
- 22:4222:42, 26 March 2015 diff hist +1 Main Page →Miscellaneous
- 22:2722:27, 26 March 2015 diff hist +4 Manual GitLab No edit summary
- 22:2722:27, 26 March 2015 diff hist +2 Manual GitLab →External links
- 22:2722:27, 26 March 2015 diff hist +133 Manual GitLab →External links
- 22:2422:24, 26 March 2015 diff hist +214 Convert between MediaWiki and other formats No edit summary
- 22:2322:23, 26 March 2015 diff hist −1 Manual GitLab No edit summary
- 22:2122:21, 26 March 2015 diff hist +43 Manual GitLab No edit summary
- 22:2022:20, 26 March 2015 diff hist +200 Manual GitLab No edit summary
- 22:1722:17, 26 March 2015 diff hist +110 Manual GitLab No edit summary
- 22:1622:16, 26 March 2015 diff hist +10 Manual GitLab No edit summary
- 22:1522:15, 26 March 2015 diff hist +4 Convert between MediaWiki and other formats →Pandoc
- 22:1522:15, 26 March 2015 diff hist +4 Convert between MediaWiki and other formats →Pandoc
12 March 2015
- 18:4618:46, 12 March 2015 diff hist +144 Variant annotation tutorial No edit summary
- 13:4013:40, 12 March 2015 diff hist −46 Variant annotation tutorial →Slicing and dicing of VCF files
- 13:3013:30, 12 March 2015 diff hist +1 Variant annotation tutorial →Slicing and dicing of VCF files
8 March 2015
- 19:0919:09, 8 March 2015 diff hist +4 Variant annotation tutorial →A further look at the VEP output
- 15:5215:52, 8 March 2015 diff hist +5 Variant annotation tutorial →If time permits: a human example
- 15:5115:51, 8 March 2015 diff hist −1 Variant annotation tutorial →snpEff
- 15:4915:49, 8 March 2015 diff hist +3 Variant annotation tutorial →snpEff
- 15:4615:46, 8 March 2015 diff hist +5 Variant annotation tutorial →Variant Effect Predictor
- 15:4415:44, 8 March 2015 diff hist +4 Variant annotation tutorial →Variant Effect Predictor
- 15:4315:43, 8 March 2015 diff hist +8 Variant annotation tutorial →Extracting variants using BEDtools
- 15:4215:42, 8 March 2015 diff hist +118 Variant annotation tutorial →Annotating VCF with rs-numbers
- 15:3815:38, 8 March 2015 diff hist +154 Variant annotation tutorial →Slicing and dicing of VCF files
- 14:5914:59, 8 March 2015 diff hist +391 Variant annotation tutorial →If time permits: a human example
- 14:5614:56, 8 March 2015 diff hist +7 Variant annotation tutorial →If time permits: a human example
- 14:5114:51, 8 March 2015 diff hist +993 Variant annotation tutorial →If time permits: a human example
- 14:4314:43, 8 March 2015 diff hist +196 Variant annotation tutorial No edit summary
- 13:0613:06, 8 March 2015 diff hist +139 Variant annotation tutorial No edit summary
- 12:3912:39, 8 March 2015 diff hist +326 Variant annotation tutorial No edit summary
- 12:2112:21, 8 March 2015 diff hist −3 Variant annotation tutorial →Provean
- 12:2012:20, 8 March 2015 diff hist 0 Variant annotation tutorial →Provean
- 12:1912:19, 8 March 2015 diff hist −11 Variant annotation tutorial No edit summary
- 11:5911:59, 8 March 2015 diff hist +29 Variant annotation tutorial →Inferring function
- 11:3911:39, 8 March 2015 diff hist −7 Variant annotation tutorial No edit summary
- 11:2811:28, 8 March 2015 diff hist +184 Variant annotation tutorial →Provean
- 11:2511:25, 8 March 2015 diff hist +164 Variant annotation tutorial →Provean
- 11:2011:20, 8 March 2015 diff hist +29 Variant annotation tutorial →A further look at the VEP output
- 11:1911:19, 8 March 2015 diff hist +21 Variant annotation tutorial →A further look at the VEP output
- 11:1811:18, 8 March 2015 diff hist +82 Variant annotation tutorial →A further look at the VEP output
- 11:1411:14, 8 March 2015 diff hist −305 Variant annotation tutorial →A further look at the VEP output
- 11:1311:13, 8 March 2015 diff hist −11 Variant annotation tutorial No edit summary
- 11:0611:06, 8 March 2015 diff hist +91 Variant annotation tutorial →A further look at the VEP output
- 11:0311:03, 8 March 2015 diff hist +10 Variant annotation tutorial →Provean
- 11:0211:02, 8 March 2015 diff hist −10 Variant annotation tutorial →Inferring function
- 11:0211:02, 8 March 2015 diff hist +30 Variant annotation tutorial →Inferring function
- 10:5910:59, 8 March 2015 diff hist +4 Variant annotation tutorial No edit summary
- 10:5810:58, 8 March 2015 diff hist +10 Variant annotation tutorial →snpEff
- 10:5710:57, 8 March 2015 diff hist −9 Variant annotation tutorial →snpEff
- 10:5610:56, 8 March 2015 diff hist +10 Variant annotation tutorial →snpEff
- 10:5610:56, 8 March 2015 diff hist +534 Variant annotation tutorial No edit summary
- 10:4010:40, 8 March 2015 diff hist +430 Variant annotation tutorial No edit summary
- 02:5602:56, 8 March 2015 diff hist 0 Variant annotation tutorial →Variant Effect Predictor
- 02:5502:55, 8 March 2015 diff hist −3 Variant annotation tutorial →Variant Effect Predictor
- 02:5302:53, 8 March 2015 diff hist +136 Variant annotation tutorial →Variant Effect Predictor
- 02:5202:52, 8 March 2015 diff hist −1 Variant annotation tutorial →Variant Effect Predictor
- 02:3302:33, 8 March 2015 diff hist +101 Variant annotation tutorial →A further look at the VEP output
7 March 2015
- 23:3723:37, 7 March 2015 diff hist −100 Variant annotation tutorial →Provean
- 23:3123:31, 7 March 2015 diff hist +15 Variant annotation tutorial →Provean
- 23:1623:16, 7 March 2015 diff hist +13 Variant annotation tutorial →Inferring function
- 23:0523:05, 7 March 2015 diff hist +10 Variant annotation tutorial →Inferring function
- 23:0423:04, 7 March 2015 diff hist +122 Variant annotation tutorial →snpEff
- 22:4722:47, 7 March 2015 diff hist +4 Variant annotation tutorial →A further look at the VEP output
- 22:4322:43, 7 March 2015 diff hist +26 Variant annotation tutorial →A further look at the VEP output
- 22:3022:30, 7 March 2015 diff hist −8 Variant annotation tutorial →Variant Effect Predictor
- 22:3022:30, 7 March 2015 diff hist −14 Variant annotation tutorial →Variant Effect Predictor
- 22:1622:16, 7 March 2015 diff hist +534 Variant annotation tutorial →Variant annotation
- 21:5921:59, 7 March 2015 diff hist +139 Variant annotation tutorial No edit summary
- 21:1121:11, 7 March 2015 diff hist +554 Variant annotation tutorial →Polyphen
- 21:0521:05, 7 March 2015 diff hist +92 Variant annotation tutorial No edit summary
- 21:0221:02, 7 March 2015 diff hist +587 Variant annotation tutorial →Variant annotation
- 20:5720:57, 7 March 2015 diff hist +30 Variant annotation tutorial →Extracting variants using BEDtools
- 20:5620:56, 7 March 2015 diff hist +33 Variant annotation tutorial →A further look at the VEP output
- 20:5420:54, 7 March 2015 diff hist +1 Variant annotation tutorial →A further look at the VEP output
- 20:5220:52, 7 March 2015 diff hist +1,230 Variant annotation tutorial →Inferring function
- 20:4120:41, 7 March 2015 diff hist +1,351 Variant annotation tutorial →Inferring function
- 20:2820:28, 7 March 2015 diff hist +1,049 Variant annotation tutorial →Inferring function
- 19:0019:00, 7 March 2015 diff hist +493 Variant annotation tutorial →snpEff
- 18:2618:26, 7 March 2015 diff hist +127 Variant annotation tutorial →snpEff
- 18:2518:25, 7 March 2015 diff hist +405 Variant annotation tutorial →A further look at the VEP output
- 18:1918:19, 7 March 2015 diff hist +1,954 Variant annotation tutorial No edit summary
- 18:0018:00, 7 March 2015 diff hist +377 Variant annotation tutorial →Variant Effect Predictor
- 17:5517:55, 7 March 2015 diff hist +27 Variant annotation tutorial →Variant Effect Predictor
- 17:5417:54, 7 March 2015 diff hist −192 Variant annotation tutorial →Variant Effect Predictor
- 17:5217:52, 7 March 2015 diff hist +89 Variant annotation tutorial →Variant Effect Predictor
- 17:5017:50, 7 March 2015 diff hist +1,227 Variant annotation tutorial →Variant Effect Predictor
- 15:5715:57, 7 March 2015 diff hist +4 Variant annotation tutorial →Variant Effect Predictor
- 15:5715:57, 7 March 2015 diff hist +8 Variant annotation tutorial →A further look at the VEP output
- 15:5515:55, 7 March 2015 diff hist −773 Variant annotation tutorial →A further look at the VEP output
- 15:5415:54, 7 March 2015 diff hist +14 Variant annotation tutorial →A further look at the VEP output
- 15:5215:52, 7 March 2015 diff hist +12 Variant annotation tutorial No edit summary
- 15:5115:51, 7 March 2015 diff hist +3,390 Variant annotation tutorial No edit summary
- 15:2015:20, 7 March 2015 diff hist −1 Variant annotation tutorial No edit summary
- 00:5800:58, 7 March 2015 diff hist +1 Variant annotation tutorial No edit summary
- 00:5800:58, 7 March 2015 diff hist +810 Variant annotation tutorial →snpEff
- 00:3800:38, 7 March 2015 diff hist −169 Variant annotation tutorial No edit summary
- 00:3600:36, 7 March 2015 diff hist +2 Variant annotation tutorial No edit summary
- 00:3500:35, 7 March 2015 diff hist +590 Variant annotation tutorial →Provean
- 00:3000:30, 7 March 2015 diff hist +182 Variant annotation tutorial →Provean
- 00:2700:27, 7 March 2015 diff hist +448 Variant annotation tutorial No edit summary
- 00:1800:18, 7 March 2015 diff hist +344 Variant annotation tutorial No edit summary
- 00:1000:10, 7 March 2015 diff hist −374 Variant annotation tutorial No edit summary
6 March 2015
- 23:4623:46, 6 March 2015 diff hist +870 Variant annotation tutorial No edit summary
- 23:2123:21, 6 March 2015 diff hist +504 Variant annotation tutorial →Provean
- 23:1023:10, 6 March 2015 diff hist +485 Variant annotation tutorial No edit summary
- 23:0423:04, 6 March 2015 diff hist +300 Variant annotation tutorial No edit summary
- 23:0123:01, 6 March 2015 diff hist +430 Variant annotation tutorial No edit summary
- 22:5422:54, 6 March 2015 diff hist +400 Variant annotation tutorial No edit summary
- 22:4922:49, 6 March 2015 diff hist +237 Variant annotation tutorial No edit summary
- 22:4622:46, 6 March 2015 diff hist +1,070 Variant annotation tutorial No edit summary
- 22:3622:36, 6 March 2015 diff hist +378 Variant annotation tutorial No edit summary
- 22:3322:33, 6 March 2015 diff hist +527 Variant annotation tutorial No edit summary
- 22:2622:26, 6 March 2015 diff hist +7 Variant annotation tutorial →Slicing and dicing of VCF files
- 22:2622:26, 6 March 2015 diff hist +481 Variant annotation tutorial No edit summary
- 19:5819:58, 6 March 2015 diff hist +247 Variant annotation tutorial →Variant Effect Predictor
- 19:5519:55, 6 March 2015 diff hist +24 Variant annotation tutorial →Variant Effect Predictor
- 19:5219:52, 6 March 2015 diff hist +964 Variant annotation tutorial →Variant Effect Predictor
- 19:2719:27, 6 March 2015 diff hist +135 Variant annotation tutorial →Variant Effect Predictor
- 15:0915:09, 6 March 2015 diff hist +96 Variant annotation tutorial →snpEff
- 15:0815:08, 6 March 2015 diff hist +106 Variant annotation tutorial →Provean
- 15:0615:06, 6 March 2015 diff hist +4 Variant annotation tutorial →snpEff
- 15:0615:06, 6 March 2015 diff hist +4 Variant annotation tutorial →Extracting variants using BEDtools
- 15:0515:05, 6 March 2015 diff hist +2,795 Variant annotation tutorial →Polyphen
- 14:4014:40, 6 March 2015 diff hist +1,175 Variant annotation tutorial No edit summary
- 14:0814:08, 6 March 2015 diff hist +57 Variant annotation tutorial →Extracting variants using BEDtools
- 14:0514:05, 6 March 2015 diff hist +133 Variant annotation tutorial →Extracting variants using BEDtools
- 13:4713:47, 6 March 2015 diff hist +46 Variant annotation tutorial No edit summary
- 13:4613:46, 6 March 2015 diff hist +66 Variant annotation tutorial No edit summary
- 13:4513:45, 6 March 2015 diff hist +137 Variant annotation tutorial No edit summary
- 11:0911:09, 6 March 2015 diff hist +406 Variant annotation tutorial No edit summary
- 11:0311:03, 6 March 2015 diff hist +138 N Variant annotation tutorial Created page with "== Slicing and dicing of VCF files == === something === == Variant Effect Predictor == == snpEff == == Polyphen == == Provean =="
- 11:0111:01, 6 March 2015 diff hist 0 Bioinformatics tips tricks workflows No edit summary
- 11:0111:01, 6 March 2015 diff hist +64 Bioinformatics tips tricks workflows No edit summary
19 February 2015
- 15:0915:09, 19 February 2015 diff hist +72 List of users No edit summary
- 13:5713:57, 19 February 2015 diff hist +66 Main Page No edit summary
- 13:5313:53, 19 February 2015 diff hist +28 List of users →FB-ICT Management of the HPC
- 13:5313:53, 19 February 2015 diff hist +2 List of users →FB-ICT Management of the HPC
- 13:5213:52, 19 February 2015 diff hist +69 List of users →Alumni
- 13:5213:52, 19 February 2015 diff hist −25 List of users →FB-ICT Management of the HPC
- 13:4613:46, 19 February 2015 diff hist 0 List of users No edit summary
- 13:4413:44, 19 February 2015 diff hist 0 Main Page →Rationale and Requirements for a new cluster
18 February 2015
- 21:5621:56, 18 February 2015 diff hist −6 Main Page →Miscellaneous
- 21:5621:56, 18 February 2015 diff hist +6 Main Page →Miscellaneous
- 21:5521:55, 18 February 2015 diff hist −1 Main Page →Process of acquisition and financing
- 21:5521:55, 18 February 2015 diff hist −2 Main Page →Rationale and Requirements for a new cluster
- 21:5521:55, 18 February 2015 diff hist −5 Main Page →Rationale and Requirements for a new cluster
- 21:5421:54, 18 February 2015 diff hist −11 Main Page No edit summary
- 21:5321:53, 18 February 2015 diff hist −5 Main Page →Cluster Management Software and Scheduler
- 21:5221:52, 18 February 2015 diff hist +38 Main Page No edit summary
- 21:5021:50, 18 February 2015 diff hist +228 Main Page No edit summary
- 21:4021:40, 18 February 2015 diff hist +36 User:Megen002 No edit summary
- 21:3821:38, 18 February 2015 diff hist +9 User:Megen002 No edit summary
- 18:2418:24, 18 February 2015 diff hist −619 Main Page →Access Policy
- 18:2418:24, 18 February 2015 diff hist +26 Access Policy No edit summary
- 18:2218:22, 18 February 2015 diff hist +1,039 N Access Policy Created page with "Access policy is still a work in progress. In principle, all staff and students of the five main partners will have access to the cluster. Access needs to be granted actively..."
- 18:2218:22, 18 February 2015 diff hist +48 Main Page →Access Policy
- 18:2018:20, 18 February 2015 diff hist 0 HPC management →See also
- 18:2018:20, 18 February 2015 diff hist +42 HPC management No edit summary
- 18:1918:19, 18 February 2015 diff hist −1 Main Page →Management
- 18:1818:18, 18 February 2015 diff hist +6 Main Page →Architecture of the cluster
- 18:1818:18, 18 February 2015 diff hist −5,608 Main Page →Architecture of the cluster
- 18:1618:16, 18 February 2015 diff hist +6,374 N Architecture of the HPC Created page with "thumb|right|600px|Schematic overview of the cluster. The new Agrogenomics HPC has a classic cluster architecture: state of the art Parallel File Sy..."
- 18:1618:16, 18 February 2015 diff hist +66 Main Page →Architecture of the cluster
- 18:1218:12, 18 February 2015 diff hist −1,976 Main Page →Management
- 18:0918:09, 18 February 2015 diff hist +2,339 N HPC management Created page with "== Project Leader == * Stephen Janssen (Wageningen UR,FB-IT, Service Management) == Daily Project Management == * User:pollm001 | Koen Pollmann (Wageningen UR,FB-IT, Infras..."
- 18:0718:07, 18 February 2015 diff hist +25 Main Page →Management
- 18:0718:07, 18 February 2015 diff hist +25 Main Page →Management
- 15:2215:22, 18 February 2015 diff hist +3 Get my bill →See also
- 15:2115:21, 18 February 2015 diff hist +1 Get my bill →See also
- 15:2115:21, 18 February 2015 diff hist +118 Get my bill No edit summary
- 15:1515:15, 18 February 2015 diff hist +43 Get my bill No edit summary
- 15:1415:14, 18 February 2015 diff hist +90 Get my bill No edit summary
- 15:1315:13, 18 February 2015 diff hist +15 Get my bill No edit summary
- 15:1215:12, 18 February 2015 diff hist +982 Get my bill No edit summary
- 14:5914:59, 18 February 2015 diff hist +476 N Get my bill Created page with "To estimate costs over a certain time-period the following script can be invoked: <source lang='bash'> /cm/shared/apps/accounting/get_my_bill </source> The script will, by d..."
- 14:5414:54, 18 February 2015 diff hist +69 Main Page →Controlling costs
12 February 2015
- 18:1718:17, 12 February 2015 diff hist +1 Convert between MediaWiki and other formats →Pandoc
- 18:1718:17, 12 February 2015 diff hist +159 Convert between MediaWiki and other formats →Pandoc
- 18:1518:15, 12 February 2015 diff hist +325 Convert between MediaWiki and other formats →Pandoc
- 18:1118:11, 12 February 2015 diff hist −392 Convert between MediaWiki and other formats No edit summary
- 18:1118:11, 12 February 2015 diff hist +392 Convert between MediaWiki and other formats →Pandoc
- 18:0718:07, 12 February 2015 diff hist +343 N Convert between MediaWiki and other formats Created page with "There are various programs that can convert to and from MediaWiki format, as used in this Wiki, and other formats. This page lists some of them and provides explanation of how..."
- 18:0318:03, 12 February 2015 diff hist +103 Main Page →Miscellaneous
5 February 2015
- 16:1816:18, 5 February 2015 diff hist +28 Globally installed software →Available as global SHARED modules
4 February 2015
- 17:4217:42, 4 February 2015 diff hist +179 Allpathslg 51910 No edit summary
- 15:5315:53, 4 February 2015 diff hist 0 Globally installed software →Available as global SHARED modules
- 15:5115:51, 4 February 2015 diff hist +53 Allpathslg 51910 No edit summary
- 15:5015:50, 4 February 2015 diff hist +32 Allpathslg 51910 No edit summary
- 15:4915:49, 4 February 2015 diff hist +364 Allpathslg 51910 →Installation details
- 15:4215:42, 4 February 2015 diff hist +1,181 N Allpathslg 51910 Created page with " '''[http://www.broadinstitute.org/software/allpaths-lg/blog/ ALLPATHS-LG]''' is a popular genome assembler. == Module file == The module file can be found in this location:..."
- 15:4015:40, 4 February 2015 diff hist +44 Globally installed software →Available as global SHARED modules
10 December 2014
- 18:1118:11, 10 December 2014 diff hist +83 Main Page No edit summary
- 18:0818:08, 10 December 2014 diff hist +366 Main Page No edit summary
1 April 2014
- 11:4311:43, 1 April 2014 diff hist +75 Calculate corrected theta from resequencing data No edit summary
- 11:4211:42, 1 April 2014 diff hist +23 Calculate corrected theta from resequencing data No edit summary
- 11:4111:41, 1 April 2014 diff hist +357 Calculate corrected theta from resequencing data No edit summary
30 March 2014
- 12:2212:22, 30 March 2014 diff hist +17 Calculate corrected theta from resequencing data No edit summary
- 12:2112:21, 30 March 2014 diff hist +5 Calculate corrected theta from resequencing data No edit summary
- 12:2012:20, 30 March 2014 diff hist +1,772 N Calculate corrected theta from resequencing data Created page with "<source lang ='bash'> #!/bin/bash #SBATCH --time=10000 #SBATCH --mem=4000 #SBATCH --ntasks=1 #SBATCH --nodes=1 #SBATCH --constraint=normalmem #SBATCH --output=output_%j.txt #S..."
- 12:1912:19, 30 March 2014 diff hist +128 Bioinformatics tips tricks workflows No edit summary
28 March 2014
- 15:1715:17, 28 March 2014 diff hist +106 1000Bulls mapping pipeline at ABGC No edit summary current
- 15:1615:16, 28 March 2014 diff hist +1,083 1000Bulls mapping pipeline at ABGC No edit summary
- 15:1315:13, 28 March 2014 diff hist +207 1000Bulls mapping pipeline at ABGC No edit summary
- 15:1215:12, 28 March 2014 diff hist +1,773 1000Bulls mapping pipeline at ABGC No edit summary
26 March 2014
- 14:3314:33, 26 March 2014 diff hist +69 Bioinformatics tips tricks workflows No edit summary
- 14:2814:28, 26 March 2014 diff hist +3,532 N Extract noncall snps from soy Created page with "== Extract the SNPs that are not called in Soy == From the <code>.ped</code> file, only the soy samples were extracted, and call rate calculated like this: <source lang='bas..." current
- 14:2814:28, 26 March 2014 diff hist +105 Bioinformatics tips tricks workflows →A list of tutorials, workflows, and recipes
- 14:1914:19, 26 March 2014 diff hist +22 Assemble mitochondrial genomes from short read data No edit summary
- 14:1814:18, 26 March 2014 diff hist +4 Assemble mitochondrial genomes from short read data No edit summary
- 14:1814:18, 26 March 2014 diff hist +409 Assemble mitochondrial genomes from short read data No edit summary
- 14:1414:14, 26 March 2014 diff hist +479 Assemble mitochondrial genomes from short read data No edit summary
- 14:0914:09, 26 March 2014 diff hist +231 Assemble mitochondrial genomes from short read data No edit summary
- 14:0614:06, 26 March 2014 diff hist +900 N Assemble mitochondrial genomes from short read data Created page with "-------------------------------------------------------------- <source lang='bash'> #!/bin/bash #SBATCH --time=10000 #SBATCH --mem=16000 #SBATCH --ntasks=8 #SBATCH --nodes=1 ..."
- 14:0514:05, 26 March 2014 diff hist +148 Bioinformatics tips tricks workflows No edit summary
- 14:0214:02, 26 March 2014 diff hist +125 Bioinformatics tips tricks workflows →A list of tutorials, workflows, and recipes
19 March 2014
17 March 2014
- 23:3923:39, 17 March 2014 diff hist +159 Sra toolkit 2.3.4 →Module file current
- 23:1323:13, 17 March 2014 diff hist +1,576 N Sra toolkit 2.3.4 Created page with "[http://eutils.ncbi.nih.gov/Traces/sra/sra.cgi?view=announcement The Sequence Read Archive (SRA)] stores raw sequence data from "next-generation" sequencing technologies inclu..."
- 22:4222:42, 17 March 2014 diff hist −17 Wgs assembler 8.1 →External links current
- 22:4222:42, 17 March 2014 diff hist +394 Wgs assembler 8.1 No edit summary
- 22:1422:14, 17 March 2014 diff hist +633 Wgs assembler 8.1 No edit summary
- 21:5021:50, 17 March 2014 diff hist +969 N Wgs assembler 8.1 Created page with "[http://en.wikipedia.org/wiki/Burrows-Wheeler_Aligner#Short-Read_Sequence_Alignment BWA] is a short read aligner designed by Heng Li and currently the most widely used aligner..."
- 21:4921:49, 17 March 2014 diff hist +87 Globally installed software →Available as global SHARED modules
- 17:1017:10, 17 March 2014 diff hist −8 Globally installed software →Available as global SHARED modules
- 17:1017:10, 17 March 2014 diff hist +2 Globally installed software →Available as global SHARED modules
- 15:3815:38, 17 March 2014 diff hist +56 Globally installed software →Available as global SHARED modules
16 March 2014
- 13:5913:59, 16 March 2014 diff hist +50 List of users No edit summary
- 13:5713:57, 16 March 2014 diff hist −30 List of users →FB-ICT Management of the HPC
- 13:5613:56, 16 March 2014 diff hist 0 List of users No edit summary
- 13:5413:54, 16 March 2014 diff hist +41 List of users No edit summary
- 13:5313:53, 16 March 2014 diff hist 0 List of users →FB-ICT Management of the HPC
- 13:4413:44, 16 March 2014 diff hist 0 List of users →Active users
- 13:4313:43, 16 March 2014 diff hist +44 List of users No edit summary
- 13:4213:42, 16 March 2014 diff hist +328 List of users No edit summary
- 13:3913:39, 16 March 2014 diff hist +66 List of users No edit summary
- 13:3713:37, 16 March 2014 diff hist +60 Main Page →IT Workgroup
- 13:3413:34, 16 March 2014 diff hist +40 Main Page →IT Workgroup
- 13:3213:32, 16 March 2014 diff hist +336 List of users No edit summary
- 13:2513:25, 16 March 2014 diff hist +224 List of users No edit summary
- 13:1713:17, 16 March 2014 diff hist +40 List of users No edit summary
- 13:0913:09, 16 March 2014 diff hist +87 Globally installed software →Available as global SHARED modules
- 12:5412:54, 16 March 2014 diff hist +7 Globally installed software →Globally installed on all nodes
- 12:5212:52, 16 March 2014 diff hist +92 Globally installed software →Globally installed on all nodes
- 12:5112:51, 16 March 2014 diff hist +16 Globally installed software →Globally installed on all nodes
- 12:4012:40, 16 March 2014 diff hist +27 Trinity r20131110 →Module file
- 00:0400:04, 16 March 2014 diff hist +2,705 N Trinity r20131110 Created page with "'''[http://trinityrnaseq.sourceforge.net/#running_trinity Trinity]''', developed at the Broad Institute and the Hebrew University of Jerusalem, represents a novel method for t..."
15 March 2014
- 23:5923:59, 15 March 2014 diff hist −171 Bowtie2 v2.2.1 No edit summary current
- 23:5823:58, 15 March 2014 diff hist +1,402 N Bowtie1 v1.0.0 Created page with "'''[http://bowtie-bio.sourceforge.net/bowtie2/index.shtml Bowtie]''' is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human g..." current
- 23:5523:55, 15 March 2014 diff hist +82 Globally installed software →Available as global SHARED modules
- 23:1323:13, 15 March 2014 diff hist −69 Globally installed software →Adding a custom module directory to your environment
- 20:5820:58, 15 March 2014 diff hist −7 Globally installed software →Adding a custom module directory to your environment
- 20:5720:57, 15 March 2014 diff hist +666 Globally installed software →Adding a custom module directory to your environment
- 20:5620:56, 15 March 2014 diff hist −2 Globally installed software →Globally installed on all nodes
- 20:1720:17, 15 March 2014 diff hist +14 MAFFT 7.130 →External links
- 20:1320:13, 15 March 2014 diff hist +20 MAFFT 7.130 →Installation details
- 20:1120:11, 15 March 2014 diff hist +1,253 N MAFFT 7.130 Created page with "'''[http://mafft.cbrc.jp/alignment/software/ MAFFT]''' is a multiple sequence alignment program for unix-like operating systems. It offers a range of multiple alignment metho..."
- 20:0820:08, 15 March 2014 diff hist −7 Muscle 3.8.31 No edit summary current
- 20:0720:07, 15 March 2014 diff hist +1,290 N Muscle 3.8.31 Created page with "'''[http://www.drive5.com/muscle/ MUSCLE]''' MUSCLE is one of the best-performing multiple alignment programs according to published benchmark tests, with accuracy and speed t..."
- 19:5919:59, 15 March 2014 diff hist −238 Jellyfish 2.1.1 No edit summary
- 19:5819:58, 15 March 2014 diff hist +68 RAxML8.0.0 →Installation details
- 19:5719:57, 15 March 2014 diff hist +2 RAxML8.0.0 →Installation details
- 19:5719:57, 15 March 2014 diff hist +267 RAxML8.0.0 No edit summary
- 19:5619:56, 15 March 2014 diff hist +240 Jellyfish 2.1.1 No edit summary
- 19:1819:18, 15 March 2014 diff hist +45 RAxML8.0.0 No edit summary
- 19:1819:18, 15 March 2014 diff hist +1,204 N RAxML8.0.0 Created page with "'''[http://www.exelixis-lab.org RAxML]''' (Randomized Axelerated Maximum Likelihood) is a program for sequential and parallel Maximum Likelihood based inference of large phylo..."
- 18:5918:59, 15 March 2014 diff hist +5 Cufflinks No edit summary current
- 18:5818:58, 15 March 2014 diff hist +1,403 N Cufflinks Created page with "'''[http://cufflinks.cbcb.umd.edu Cufflinks]''' assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples. It ..."
- 18:4318:43, 15 March 2014 diff hist +1 TopHat 2.0.11 No edit summary current
- 18:4318:43, 15 March 2014 diff hist +1,204 N TopHat 2.0.11 Created page with "'''http://tophat.cbcb.umd.edu TopHat]''' is a fast splice junction mapper for RNA-Seq reads. It aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput..."
- 18:3918:39, 15 March 2014 diff hist 0 Globally installed software →Available as global SHARED modules
- 18:3818:38, 15 March 2014 diff hist +169 Globally installed software →Available as global SHARED modules
- 16:1416:14, 15 March 2014 diff hist −9 Jellyfish 2.1.1 No edit summary
- 16:1316:13, 15 March 2014 diff hist −166 Jellyfish 2.1.1 →Installation details
- 16:1316:13, 15 March 2014 diff hist +2 Jellyfish 2.1.1 No edit summary
- 16:1216:12, 15 March 2014 diff hist −16 Jellyfish 2.1.1 →Installation details
- 16:1016:10, 15 March 2014 diff hist +1,686 N Jellyfish 2.1.1 Created page with "'''[http://soap.genomics.org.cn/soapdenovo.html#intro2 SOAPdenovo2]''' is a popular genome assembler. == Module file == The module file can be found in this location: /cm/..."
- 16:0816:08, 15 March 2014 diff hist +40 Globally installed software →Available as global SHARED modules
- 15:4115:41, 15 March 2014 diff hist +4 Allpathslg 48961 →Module file
- 15:4015:40, 15 March 2014 diff hist +4 Allpathslg 48961 →Module file
- 15:3315:33, 15 March 2014 diff hist −3 Allpathslg 48961 No edit summary
- 15:3315:33, 15 March 2014 diff hist −189 Allpathslg 48961 No edit summary
- 15:3215:32, 15 March 2014 diff hist +132 Allpathslg 48961 →Installation details
- 15:3015:30, 15 March 2014 diff hist +1,224 N Allpathslg 48961 Created page with " '''[http://www.broadinstitute.org/software/allpaths-lg/blog/ ALLPATHS-LG]''' is a popular genome assembler. == Module file == The module file can be found in this location:..."
- 15:2415:24, 15 March 2014 diff hist +43 Globally installed software →Available as global SHARED modules
- 15:0715:07, 15 March 2014 diff hist +93 Soapdenovo2 r240 →Installation details current
- 14:5614:56, 15 March 2014 diff hist −26 Bowtie2 v2.2.1 →External links
- 14:5414:54, 15 March 2014 diff hist +454 Bowtie2 v2.2.1 No edit summary
- 14:5214:52, 15 March 2014 diff hist +1,301 N Bowtie2 v2.2.1 Created page with " '''[http://soap.genomics.org.cn/soapdenovo.html#intro2 SOAPdenovo2]''' is a popular genome assembler. == Module file == The module file can be found in this location: /cm..."
- 14:5014:50, 15 March 2014 diff hist +38 Globally installed software →Available as global SHARED modules
- 14:4914:49, 15 March 2014 diff hist +28 Soapdenovo2 r240 →Installation details
- 14:4514:45, 15 March 2014 diff hist −76 Soapdenovo2 r240 No edit summary
- 14:3814:38, 15 March 2014 diff hist +1,389 N Soapdenovo2 r240 Created page with " '''[http://en.wikipedia.org/wiki/BLAT_(bioinformatics) BLAT]''' (BLAST-like alignment tool) is a pairwise sequence alignment algorithm that was developed by Jim Kent at the U..."
- 14:3714:37, 15 March 2014 diff hist +42 Globally installed software →Available as global SHARED modules
- 11:1411:14, 15 March 2014 diff hist −2 Snap →Further details
- 11:1411:14, 15 March 2014 diff hist −10 Snap →Module file
- 11:1311:13, 15 March 2014 diff hist −13 Samtools v0.1.19 →Module file
- 11:1311:13, 15 March 2014 diff hist −13 Samtools v0.1.12a →Module file
- 11:1211:12, 15 March 2014 diff hist −4 RepeatModeler 1.0.7 →Installation details
- 11:1111:11, 15 March 2014 diff hist −7 RepeatModeler 1.0.7 →Module file
- 11:1111:11, 15 March 2014 diff hist −6 RepeatMasker 4.0.3 →Installation details current
- 11:1011:10, 15 March 2014 diff hist −8 RepeatMasker 4.0.3 →Module file
- 11:0911:09, 15 March 2014 diff hist −26 Provean 1.1.3 →Installation details
- 11:0311:03, 15 March 2014 diff hist −7 Provean 1.1.3 →Module file
- 11:0211:02, 15 March 2014 diff hist −7 Plink 1.07 →Module file
- 11:0111:01, 15 March 2014 diff hist −12 Maker 2.2.8 →Module file
- 11:0011:00, 15 March 2014 diff hist −7 Hmmer 3.1 →Module file current
- 11:0011:00, 15 March 2014 diff hist −11 Genewise 2.2.3 →Module file
- 10:5910:59, 15 March 2014 diff hist −8 Geneid 1.4.4 →Module file
- 10:5910:59, 15 March 2014 diff hist −7 Exonerate 2.2.0 →Module file current
- 10:5810:58, 15 March 2014 diff hist −18 Cegma 2.4 →Module file
- 10:5710:57, 15 March 2014 diff hist −9 Bwa 7.5 →Module file current
- 10:5710:57, 15 March 2014 diff hist −8 Bwa 5.9 →Module file current
- 10:5610:56, 15 March 2014 diff hist −10 Blat v35 →Module file current
- 10:5510:55, 15 March 2014 diff hist −8 BLAST →Module file current
- 10:5310:53, 15 March 2014 diff hist −7 Bedtools2.18 →Module file
- 10:5310:53, 15 March 2014 diff hist −10 Augustus 2.7 →Module file current
- 10:5110:51, 15 March 2014 diff hist +48 Globally installed software →See also
- 10:5010:50, 15 March 2014 diff hist −688 ABGC modules No edit summary
- 10:4910:49, 15 March 2014 diff hist −64 Globally installed software No edit summary
- 10:4810:48, 15 March 2014 diff hist +2,313 Globally installed software No edit summary
13 March 2014
- 14:5614:56, 13 March 2014 diff hist +542 Plink 1.07 No edit summary
- 14:5314:53, 13 March 2014 diff hist +125 Plink 1.07 No edit summary
- 14:5214:52, 13 March 2014 diff hist +381 N Plink 1.07 Created page with "#%Module1.0####################################################################### ## plink 1.07 modulefile ## proc ModulesHelp { } { puts stderr "\tAdds plink v1.07 ..."
- 14:5214:52, 13 March 2014 diff hist +30 ABGC modules →Modules available for ABGC
6 February 2014
- 10:4910:49, 6 February 2014 diff hist +953 Using Slurm No edit summary
8 January 2014
- 17:3217:32, 8 January 2014 diff hist +1,521 Maker protocols Pmajor →Maker settings
- 17:3017:30, 8 January 2014 diff hist +1,491 Maker protocols Pmajor →Maker settings
- 17:2717:27, 8 January 2014 diff hist +506 Maker protocols Pmajor →Round 1
7 January 2014
- 12:4412:44, 7 January 2014 diff hist +78 Bioinformatics tips tricks workflows →External links
- 12:3912:39, 7 January 2014 diff hist −2 Main Page →External links
- 12:3912:39, 7 January 2014 diff hist +80 Main Page →External links
6 January 2014
- 23:3523:35, 6 January 2014 diff hist +43 Maker protocols Pmajor No edit summary
- 23:3423:34, 6 January 2014 diff hist +179 Maker protocols Pmajor No edit summary
- 23:3323:33, 6 January 2014 diff hist +74 Maker 2.2.8 →See also
- 23:3123:31, 6 January 2014 diff hist +65 Maker protocols Pmajor →See also
- 23:2923:29, 6 January 2014 diff hist +38 Maker protocols Pmajor No edit summary
- 23:2923:29, 6 January 2014 diff hist +329 Maker protocols Pmajor →Round 1
- 23:2323:23, 6 January 2014 diff hist +162 Maker protocols Pmajor No edit summary
- 23:2123:21, 6 January 2014 diff hist +4,668 N Maker protocols Pmajor Created page with " #-----Genome (these are always required) genome=Pam.fa #genome sequence (fasta file or fasta embeded in GFF3 file) organism_type=eukaryotic #eukaryotic or prokaryotic. D..."
29 December 2013
- 13:2313:23, 29 December 2013 diff hist −14 Provean Sus scrofa →Master script to control the submission of jobs and cleaning
28 December 2013
- 22:1822:18, 28 December 2013 diff hist +155 Setting TMPDIR →Overriding the system default - works for many applications (but not all)
- 21:4321:43, 28 December 2013 diff hist +211 Setting TMPDIR →Setting custom temporary directory for Java applications
- 21:3921:39, 28 December 2013 diff hist −57 Setting TMPDIR →See also
- 21:3921:39, 28 December 2013 diff hist +167 Setting TMPDIR No edit summary
- 21:3821:38, 28 December 2013 diff hist −2 Setting TMPDIR →Setting custom temporary directory for Java applications
- 21:3421:34, 28 December 2013 diff hist +38 Setting TMPDIR No edit summary
- 21:3321:33, 28 December 2013 diff hist +494 Setting TMPDIR No edit summary
27 December 2013
- 21:4321:43, 27 December 2013 diff hist +50 Short read mapping pipeline pig No edit summary current
- 21:4221:42, 27 December 2013 diff hist +7 Short read mapping pipeline pig →Present in PATH
- 21:4221:42, 27 December 2013 diff hist +8 Short read mapping pipeline pig →In PATH
- 21:4121:41, 27 December 2013 diff hist −19 Short read mapping pipeline pig →Hardcoded paths
- 21:4121:41, 27 December 2013 diff hist +99 Short read mapping pipeline pig →In PATH
- 21:3021:30, 27 December 2013 diff hist +49 Short read mapping pipeline pig →Prerequisites
- 21:2821:28, 27 December 2013 diff hist +384 Short read mapping pipeline pig →Hardcoded paths
- 21:2421:24, 27 December 2013 diff hist +186 Short read mapping pipeline pig No edit summary
- 21:2321:23, 27 December 2013 diff hist +250 Short read mapping pipeline pig →Hardcoded paths
- 21:2121:21, 27 December 2013 diff hist +97 Short read mapping pipeline pig →Data sources
- 21:1521:15, 27 December 2013 diff hist +169 Short read mapping pipeline pig No edit summary
- 21:1421:14, 27 December 2013 diff hist +89 Short read mapping pipeline pig →Prerequisites
- 21:1321:13, 27 December 2013 diff hist +21 Short read mapping pipeline pig →Prerequisites
- 21:1221:12, 27 December 2013 diff hist +41 Short read mapping pipeline pig No edit summary
- 21:1121:11, 27 December 2013 diff hist +145 Short read mapping pipeline pig →Prerequisites
- 21:0821:08, 27 December 2013 diff hist +808 Short read mapping pipeline pig →Prerequisites
- 21:0221:02, 27 December 2013 diff hist +57 Short read mapping pipeline pig →See also
- 20:5720:57, 27 December 2013 diff hist +7 Short read mapping pipeline pig No edit summary
- 20:5720:57, 27 December 2013 diff hist +340 Short read mapping pipeline pig No edit summary
- 20:5320:53, 27 December 2013 diff hist 0 Short read mapping pipeline pig →Basic execution
- 20:5220:52, 27 December 2013 diff hist −90 Short read mapping pipeline pig →Automated runfile creation
- 20:5120:51, 27 December 2013 diff hist +324 Short read mapping pipeline pig No edit summary
- 20:4820:48, 27 December 2013 diff hist +288 Short read mapping pipeline pig No edit summary
- 20:4520:45, 27 December 2013 diff hist +6 Short read mapping pipeline pig No edit summary
- 14:3414:34, 27 December 2013 diff hist −1 Provean Sus scrofa →Master script to control the submission of jobs and cleaning
- 14:2714:27, 27 December 2013 diff hist +716 Provean Sus scrofa No edit summary
- 14:2314:23, 27 December 2013 diff hist +47 Provean Sus scrofa →See also
- 14:2214:22, 27 December 2013 diff hist +16 Provean Sus scrofa No edit summary
- 13:0213:02, 27 December 2013 diff hist +308 Provean Sus scrofa No edit summary
- 13:0013:00, 27 December 2013 diff hist +1,261 Provean Sus scrofa No edit summary
- 12:5812:58, 27 December 2013 diff hist +1,119 Provean Sus scrofa No edit summary
- 12:5612:56, 27 December 2013 diff hist +357 Provean Sus scrofa No edit summary
- 12:5312:53, 27 December 2013 diff hist +1,560 N Provean Sus scrofa Created page with "<source lang='bash'> !/bin/bash #SBATCH --time=4800 #SBATCH --ntasks=1 #SBATCH --mem-per-cpu=16000 #SBATCH --nice=1000 #SBATCH --output=output_%j.txt #SBATCH --error=error_out..."
- 12:5112:51, 27 December 2013 diff hist +78 Provean 1.1.3 →See also
25 December 2013
24 December 2013
- 22:2522:25, 24 December 2013 diff hist +89 BLAST →External links
- 22:2322:23, 24 December 2013 diff hist −5 Provean 1.1.3 →Installation details
- 22:2322:23, 24 December 2013 diff hist +268 Provean 1.1.3 →External links
- 22:1922:19, 24 December 2013 diff hist +1,352 N Provean 1.1.3 Created page with "[http://provean.jcvi.org/about.php PROVEAN] was developed to predict whether a protein sequence variation affects protein function. == Module file == The module file can be f..."
- 22:1522:15, 24 December 2013 diff hist +35 ABGC modules →Modules available for ABGC
- 11:5911:59, 24 December 2013 diff hist +1,445 N Bedtools2.18 Created page with "Collectively, the bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks. The most widely-used tools enable genome arithmetic: that is,..."
- 11:5611:56, 24 December 2013 diff hist +35 ABGC modules No edit summary
23 December 2013
- 01:0601:06, 23 December 2013 diff hist −1 Main Page →User Group
22 December 2013
- 21:1321:13, 22 December 2013 diff hist +1,482 N Samtools v0.1.19 Created page with "[http://samtools.sourceforge.net SAM Tools] provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignm..."
- 21:1121:11, 22 December 2013 diff hist +26 Samtools v0.1.12a →Installation details
- 21:1021:10, 22 December 2013 diff hist −1 Samtools v0.1.12a No edit summary
- 21:1021:10, 22 December 2013 diff hist +299 Samtools v0.1.12a No edit summary
- 21:0621:06, 22 December 2013 diff hist +1,166 N Samtools v0.1.12a Created page with "[http://en.wikipedia.org/wiki/Burrows-Wheeler_Aligner#Short-Read_Sequence_Alignment BWA] is a short read aligner designed by Heng Li and currently the most widely used aligner..."
- 21:0521:05, 22 December 2013 diff hist +84 ABGC modules No edit summary
- 04:1404:14, 22 December 2013 diff hist +8 Globally installed software No edit summary
- 04:1404:14, 22 December 2013 diff hist +127 Globally installed software No edit summary
21 December 2013
- 22:1622:16, 21 December 2013 diff hist −1 Main Page →Network File System (NFS): $HOME dirs
- 22:1522:15, 21 December 2013 diff hist +126 ABGC modules →See also
- 22:1322:13, 21 December 2013 diff hist +319 ABGC modules →See also
- 22:1222:12, 21 December 2013 diff hist +34 ABGC modules No edit summary
- 22:1122:11, 21 December 2013 diff hist +31 ABGC modules No edit summary
- 15:1915:19, 21 December 2013 diff hist +151 Cegma 2.4 No edit summary
- 15:1615:16, 21 December 2013 diff hist +209 Geneid 1.4.4 No edit summary
- 15:1315:13, 21 December 2013 diff hist +111 RepeatModeler 1.0.7 →Installation details
- 15:1115:11, 21 December 2013 diff hist −2 RepeatModeler 1.0.7 →Installation details
- 15:1115:11, 21 December 2013 diff hist +74 RepeatModeler 1.0.7 →Installation details
- 15:1015:10, 21 December 2013 diff hist +421 RepeatModeler 1.0.7 No edit summary
- 15:0415:04, 21 December 2013 diff hist +632 RepeatModeler 1.0.7 No edit summary
- 15:0215:02, 21 December 2013 diff hist +176 Exonerate 2.2.0 No edit summary
- 15:0015:00, 21 December 2013 diff hist +238 Exonerate 2.2.0 No edit summary
- 14:5914:59, 21 December 2013 diff hist +11 Exonerate 2.2.0 →External links
- 14:5814:58, 21 December 2013 diff hist +64 Exonerate 2.2.0 No edit summary
- 14:5714:57, 21 December 2013 diff hist +174 Hmmer 3.1 No edit summary
- 14:5214:52, 21 December 2013 diff hist −14 Hmmer 3.1 →External links
- 14:5114:51, 21 December 2013 diff hist +283 Hmmer 3.1 No edit summary
- 14:5014:50, 21 December 2013 diff hist +293 Genewise 2.2.3 No edit summary
- 14:4614:46, 21 December 2013 diff hist +186 Genewise 2.2.3 No edit summary
- 14:4614:46, 21 December 2013 diff hist +21 Geneid 1.4.4 No edit summary
- 14:3214:32, 21 December 2013 diff hist +1 RepeatMasker 4.0.3 →Installation details
- 14:3214:32, 21 December 2013 diff hist +61 RepeatMasker 4.0.3 →Installation details
- 14:3014:30, 21 December 2013 diff hist +162 RepeatMasker 4.0.3 →Installation details
- 14:2914:29, 21 December 2013 diff hist +204 RepeatMasker 4.0.3 →Installation details
- 14:2614:26, 21 December 2013 diff hist +314 RepeatMasker 4.0.3 →Installation details
- 14:2214:22, 21 December 2013 diff hist +251 RepeatMasker 4.0.3 No edit summary
- 14:1814:18, 21 December 2013 diff hist +43 BLAST →Installation details
- 14:1614:16, 21 December 2013 diff hist +108 BLAST No edit summary
- 14:1514:15, 21 December 2013 diff hist −1 Blat v35 →Installation details
- 14:1514:15, 21 December 2013 diff hist +107 Blat v35 →See also
- 14:1414:14, 21 December 2013 diff hist +29 Blat v35 No edit summary
- 14:1314:13, 21 December 2013 diff hist +142 Cegma 2.4 →See also
- 14:1114:11, 21 December 2013 diff hist +343 Cegma 2.4 No edit summary
- 14:0914:09, 21 December 2013 diff hist +233 Maker 2.2.8 No edit summary
- 14:0614:06, 21 December 2013 diff hist +284 Augustus 2.7 No edit summary
- 14:0214:02, 21 December 2013 diff hist +303 Cegma 2.4 No edit summary
- 14:0014:00, 21 December 2013 diff hist +457 Snap No edit summary
- 13:5313:53, 21 December 2013 diff hist +722 N Snap Created page with " == Module file == The module file can be found in this location: /cm/shared/apps/WUR/ABGC/modulefiles <source lang='tcl'> #%Module1.0######################################..."
- 13:5313:53, 21 December 2013 diff hist +722 N RepeatModeler 1.0.7 Created page with " == Module file == The module file can be found in this location: /cm/shared/apps/WUR/ABGC/modulefiles <source lang='tcl'> #%Module1.0######################################..."
- 13:5313:53, 21 December 2013 diff hist +722 N Genewise 2.2.3 Created page with " == Module file == The module file can be found in this location: /cm/shared/apps/WUR/ABGC/modulefiles <source lang='tcl'> #%Module1.0######################################..."
- 13:5213:52, 21 December 2013 diff hist +722 N Geneid 1.4.4 Created page with " == Module file == The module file can be found in this location: /cm/shared/apps/WUR/ABGC/modulefiles <source lang='tcl'> #%Module1.0######################################..."
- 13:5213:52, 21 December 2013 diff hist +722 N Exonerate 2.2.0 Created page with " == Module file == The module file can be found in this location: /cm/shared/apps/WUR/ABGC/modulefiles <source lang='tcl'> #%Module1.0######################################..."
- 13:5213:52, 21 December 2013 diff hist +722 N Cegma 2.4 Created page with " == Module file == The module file can be found in this location: /cm/shared/apps/WUR/ABGC/modulefiles <source lang='tcl'> #%Module1.0######################################..."
- 13:5113:51, 21 December 2013 diff hist +722 N Hmmer 3.1 Created page with " == Module file == The module file can be found in this location: /cm/shared/apps/WUR/ABGC/modulefiles <source lang='tcl'> #%Module1.0######################################..."
- 13:0313:03, 21 December 2013 diff hist +867 N Augustus 2.7 Created page with "Augustus is a gene prediction/annotation pipeline. == Module file == The module file can be found in this location: /cm/shared/apps/WUR/ABGC/modulefiles <source lang='tcl'..."
- 13:0113:01, 21 December 2013 diff hist +2 ABGC modules →Modules available for ABGC
- 13:0013:00, 21 December 2013 diff hist +154 ABGC modules →Modules available for ABGC
- 12:5712:57, 21 December 2013 diff hist +19 ABGC modules →Modules available for ABGC
- 12:5112:51, 21 December 2013 diff hist −28 RepeatMasker 4.0.3 →External links
- 12:5012:50, 21 December 2013 diff hist +1,749 N RepeatMasker 4.0.3 Created page with "[http://www.repeatmasker.org RepeatMasker]RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences. The output of the pro..."
- 12:4512:45, 21 December 2013 diff hist +107 BLAST →See also
- 12:4512:45, 21 December 2013 diff hist +107 Maker 2.2.8 →See also
- 12:4412:44, 21 December 2013 diff hist +108 Bwa 7.5 →See also
- 12:4312:43, 21 December 2013 diff hist +6 Bwa 7.5 →Module file
- 12:4212:42, 21 December 2013 diff hist +919 N Bwa 5.9 Created page with "[http://en.wikipedia.org/wiki/Burrows-Wheeler_Aligner#Short-Read_Sequence_Alignment BWA] is a short read aligner designed by Heng Li and currently the most widely used aligner..."
- 12:4212:42, 21 December 2013 diff hist +14 ABGC modules →Modules available for ABGC
- 12:4112:41, 21 December 2013 diff hist −107 Bwa 7.5 No edit summary
- 12:4112:41, 21 December 2013 diff hist +107 Bwa 7.5 →See also