Globally installed software: Difference between revisions

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* [[genewise_2.2.3 | genewise/2.2.3-rc7]]     
* [[genewise_2.2.3 | genewise/2.2.3-rc7]]     
* [[hmmer_3.1 | hmmer/3.1b1]]
* [[hmmer_3.1 | hmmer/3.1b1]]
* [[jellyfish_2.1.1 | jellyfish/2.1.1]]
* [[maker_2.2.8 | maker/2.28]]     
* [[maker_2.2.8 | maker/2.28]]     
* [[Plink_1.07 | Plink/1.07]]
* [[Plink_1.07 | Plink/1.07]]

Revision as of 16:08, 15 March 2014

Available as modules

  • gcc/4.8.1
  • python/2.7.6
  • python/3.3.3
  • R/3.0.2

Globally installed on all nodes

  • Perl5.10
  • pigz
  • Python2.6
  • BioPerl v1.61

Available as global SHARED modules

Modules can be found in: 

 /cm/shared/modulefiles/SHARED/

Adding a custom module directory to your environment

To allow the module program to find the custom module directory, the location of that directory has to be added to MODULEPATH variable.

<source lang='bash'> export MODULEPATH=$MODULEPATH:/cm/shared/apps/WUR/ABGC/modulefiles </source> This can be made permanent by adding this line of code to the .bash_profile file in the root of your home folder. To then load the modified MODULEPATH variable you have to load .bash_profile again: <source lang='bash'> source .bash_profile </source> This needs to be done only for terminals that are already open. Next time you login, .bash_profile will be loaded automatically.

You can check if the modules are found. <source lang='bash'> module avail </source> This should give output that includes something similar to this: 

 ----------------------------------- /cm/shared/apps/WUR/ABGC/modulefiles -----------------------------------
 bwa/0.5.9  bwa/0.7.5a

See also

External links

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