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The Agrogenomics cluster is a [http://en.wikipedia.org/wiki/High-performance_computing High Performance Computer] (HPC) infrastructure hosted by [http://www.wageningenur.nl/nl/activiteit/Opening-High-Performance-Computing-cluster-HPC.htm Wageningen University & Research Centre]. It is open for use for all WUR research groups as well as other organizations, including companies, that have collaborative projects with WUR.  
Anunna is a [http://en.wikipedia.org/wiki/High-performance_computing High Performance Computer] (HPC) infrastructure hosted by [http://www.wageningenur.nl/nl/activiteit/Opening-High-Performance-Computing-cluster-HPC.htm Wageningen University & Research Centre]. It is open for use for all WUR research groups as well as other organizations, including companies, that have collaborative projects with WUR.  


The Agrogenomics HPC was an initiative of the [http://www.breed4food.com/en/breed4food.htm Breed4Food] (B4F) consortium, consisting of the [[About_ABGC | Animal Breeding and Genomics Centre]] (WU-Animal Breeding and Genomics and Wageningen Livestock Research) and four major breeding companies: [http://www.cobb-vantress.com Cobb-Vantress], [https://www.crv4all.nl CRV], [http://www.hendrix-genetics.com Hendrix Genetics], and [http://www.topigs.com TOPIGS]. Currently, in addition to the original partners, the HPC (HPC-Ag) is used by other groups from Wageningen UR (Bioinformatics, Centre for Crop Systems Analysis, Environmental Sciences Group, and Plant Research International) and plant breeding industry (Rijk Zwaan).
= Using Anunna =
 
== Gaining access to Anunna==
= Using the HPC-Ag =
== Gaining access to the HPC-Ag ==
Access to the cluster and file transfer are traditionally done via [http://en.wikipedia.org/wiki/Secure_Shell SSH and SFTP].
Access to the cluster and file transfer are traditionally done via [http://en.wikipedia.org/wiki/Secure_Shell SSH and SFTP].
* [[log_in_to_B4F_cluster | Logging into cluster using ssh and file transfer]]
* [[log_in_to_B4F_cluster | Logging into cluster using ssh and file transfer]]
* [[Services | Alternative access methods, and extra features and services on the HPC]]
* [[Services | Alternative access methods, and extra features and services on Anunna]]
* [[Filesystems | Accessible storage methods on the HPC]]
* [[Filesystems | Accessible storage methods on Anunna]]


== Access Policy ==
== Access Policy ==
[[Access_Policy | Main Article: Access Policy]]
[[Access_Policy | Main Article: Access Policy]]


Access needs to be granted actively (by creation of an account on the cluster by FB-IT). Use of resources is limited by the scheduler. Depending on availability of queues ('partitions') granted to a user, priority to the system's resources is regulated. Note that the use of the HPC-Ag is not free of charge. List price of CPU time and storage, and possible discounts on that list price for your organisation, can be retrieved from CAT-AGRO or FB-ICT.
Access needs to be granted actively (by creation of an account on the cluster by FB-IT). Use of resources is limited by the scheduler. Depending on availability of queues ('partitions') granted to a user, priority to the system's resources is regulated. Note that the use of Anunna is not free of charge. List price of CPU time and storage, and possible discounts on that list price for your organisation, can be retrieved from CAT-AGRO or FB-ICT.


= Events =
= Events =
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== Cluster Management Software and Scheduler ==
== Cluster Management Software and Scheduler ==
The HPC-Ag uses Bright Cluster Manager software for overall cluster management, and Slurm as job scheduler.
Anunna uses Bright Cluster Manager software for overall cluster management, and Slurm as job scheduler.
* [[BCM_on_B4F_cluster | Monitor cluster status with BCM]]
* [[BCM_on_B4F_cluster | Monitor cluster status with BCM]]
* [[SLURM_on_B4F_cluster | Submit jobs with Slurm]]
* [[SLURM_on_B4F_cluster | Submit jobs with Slurm]]
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== Management ==
== Management ==
[[HPC_management | Main Article: HPC management]]
[[Anunna | Main Article: Anunna management]]


Project Leader of the HPC is Stephen Janssen (Wageningen UR,FB-IT, Service Management). [[User:lith010 | Jan van Lith (Wageningen UR,FB-IT, Infrastructure)]] and [[User:dawes001 | Gwen Dawes (Wageningen UR, FB-IT, Infrastructure)]] are responsible for [[Maintenance_and_Management | Maintenance and Management]].
Project Leader of Anunna is Stephen Janssen (Wageningen UR,FB-IT, Service Management). [[User:lith010 | Jan van Lith (Wageningen UR,FB-IT, Infrastructure)]], [[User:dawes001 | Gwen Dawes (Wageningen UR, FB-IT, Infrastructure)]] and [[User:vaend001 | Catharina Vaendel(Wageningen UR,FB-IT, Infrastructure)]] are responsible for [[Maintenance_and_Management | Maintenance and Management]].


= Miscellaneous =
= Miscellaneous =
* [[Mailinglist | Electronic mail discussion lists]]
* [[Mailinglist | Electronic mail discussion lists]]
* [[History_of_the_Cluster | Historical information on the startup of the HPC]]
* [[History_of_the_Cluster | Historical information on the startup of Anunna]]
* [[Bioinformatics_tips_tricks_workflows | Bioinformatics tips, tricks, and workflows]]
* [[Bioinformatics_tips_tricks_workflows | Bioinformatics tips, tricks, and workflows]]
* [[Parallel_R_code_on_SLURM | Running parallel R code on SLURM]]
* [[Parallel_R_code_on_SLURM | Running parallel R code on SLURM]]

Revision as of 19:16, 19 February 2019

Anunna is a High Performance Computer (HPC) infrastructure hosted by Wageningen University & Research Centre. It is open for use for all WUR research groups as well as other organizations, including companies, that have collaborative projects with WUR.

Using Anunna

Gaining access to Anunna

Access to the cluster and file transfer are traditionally done via SSH and SFTP.

Access Policy

Main Article: Access Policy

Access needs to be granted actively (by creation of an account on the cluster by FB-IT). Use of resources is limited by the scheduler. Depending on availability of queues ('partitions') granted to a user, priority to the system's resources is regulated. Note that the use of Anunna is not free of charge. List price of CPU time and storage, and possible discounts on that list price for your organisation, can be retrieved from CAT-AGRO or FB-ICT.

Events

  • Courses that have happened and are happening
  • Downtime that will affect all users
  • Meetings that may affect the policies of the HPC

Other Software

Cluster Management Software and Scheduler

Anunna uses Bright Cluster Manager software for overall cluster management, and Slurm as job scheduler.

Installation of software by users

Installed software

Useful Notes

Being in control of Environment parameters

Controlling costs

Management

Main Article: Anunna management

Project Leader of Anunna is Stephen Janssen (Wageningen UR,FB-IT, Service Management). Jan van Lith (Wageningen UR,FB-IT, Infrastructure), Gwen Dawes (Wageningen UR, FB-IT, Infrastructure) and Catharina Vaendel(Wageningen UR,FB-IT, Infrastructure) are responsible for Maintenance and Management.

Miscellaneous

See also

External links

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