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= '''Animal Breeding & Genomics Centre Wiki''' =
Anunna is a [http://en.wikipedia.org/wiki/High-performance_computing High Performance Computer] (HPC) infrastructure hosted by [https://www.wur.nl/en/show/supercomputer-anunna-opens-up-more-opportunities-for-data-storage-and-artificial-intelligence-applications.htm Wageningen University & Research Centre]. It is open for use for all WUR research groups as well as other organizations, including companies, that have collaborative projects with WUR.


== Access Policy ==
[[Access_Policy | Main Article: Access Policy]]


'''Welcome to the Animal Breeding and Genomics Centre Wiki Site!'''
Access needs to be granted actively (by creation of an account on the cluster by FB-IT). Use of resources is limited by the scheduler. Note that the use of Anunna is not free of charge.


The intended use of this Wiki is to share information between members of the ABGC. These can include lab-protocols, bioinformatics protocols and scripts, meeting schedules, best practices, important addresses, meeting room locations, etc, etc.
= Using Anunna =
* [[Tariffs | Costs associated with resource usage]]


In the true spirit of the WikiMedia foundation, we aim to keep the restrictions to access as low as possible. This means that this site will generally not be a good place to share sensitive information on projects etc. The ABGC portal will be a better place for that. The advantage of a Wiki is that it is searchable, and setting up a Wiki page is really easy.
== Gaining access to Anunna==
Access to the cluster and file transfer are traditionally done via [http://en.wikipedia.org/wiki/Secure_Shell SSH and SFTP].
* [[log_in_to_B4F_cluster | Logging into cluster using ssh]]
* [[file_transfer | File transfer options]]
* [[Services | Alternative access methods, and extra features and services on Anunna]]
* [[Filesystems | Data storage methods on Anunna]]


Currently you will need to create an account (link is found upper right corner of this site) to be able to create and edit pages. Please feel free to add content to this Wiki to make this a useful resource for Animal Breeding and Genomics Centre members and guests!
== Using Anunna for courses ==
* [[steps_for_courses | Steps involved to run a course on Anunna]]
= Events =


== Topics ==
* [[Courses]] that have happened and are happening
{| width="100%"
* [[Downtime]] that will affect all users
|- valign="top"
* [[Meetings]] that may affect the policies of Anunna
| width="25%" |
 
* [[about ABGC|about ABGC ]]
= Software =
* [[ABGC secretariat|Front office and secretariat]]
* [[Modules]]
* [[events|events]]
* [[Apptainer]]
| width="25%" |
* [[Python]]
* [[courses|courses]]
* [[R]]
* [[ABGC lab|molecular lab]]
* [[Julia]]
| width="25%" |
 
* [[ABGC bioinformatics infrastructure|bioinformatics infrastructure]]
=Web Apps=
|}
 
== Groups ==
*[[Jupyter]]
{| width="100%"
 
|- valign="top"
= Other Software =
| width="25%" |
 
* [[Animal Breeding and Genetics chair group|Animal Breeding and Genetics]]
== Cluster Scheduler ==
| width="25%" |
Anunna uses Slurm as job scheduler.
* [[Genetic and Genomics Research Cluster |Genetics and Genomics]]
* [[Using_Slurm | Submit jobs with Slurm]]
| width="25%" |
* [[node_usage_graph | Be aware of how much work the cluster is under right now with 'node_usage_graph']]
* [[SLURM_Compare | Rosetta Stone of Workload Managers]]
 
== Installation of software by users ==
 
* [[Domain_specific_software_on_B4Fcluster_installation_by_users | Installing domain specific software: installation by users]]
* [[Setting local variables]]
* [[Installing_R_packages_locally | Installing R packages locally]]
* [[Setting_up_Python_virtualenv | Setting up and using a virtual environment for Python3 ]]
* [[Virtual_environment_Python_3.4_or_higher | Setting up and using a virtual environment for Python3.4 or higher ]]
* [[Installing WRF and WPS]]
* [[Running scripts on a fixed timeschedule (cron)]]
 
== Installed software ==
 
* [[Globally_installed_software | Globally installed software]]
* [[ABGC_modules | ABGC specific modules]]
 
= Useful Notes =
 
== Being in control of Environment parameters ==
 
* [[Using_environment_modules | Using environment modules]]
* [[Setting local variables]]
* [[Setting_TMPDIR | Set a custom temporary directory location]]
* [[Installing_R_packages_locally | Installing R packages locally]]
* [[Setting_up_Python_virtualenv | Setting up and using a virtual environment for Python3 ]]
 
== Controlling costs ==
 
* [[SACCT | using SACCT to see your costs]]
* [[get_my_bill | using the "get_my_bill" script to estimate costs]]
 
== Management ==
Product Owner of Anunna is Alexander van Ittersum (Wageningen UR,FB-IT, C&PS). [[User: prins089 | Fons Prinsen (Wageningen UR, FB-IT, C&PS)]] is responsible for [[Maintenance_and_Management | Maintenance and Management]] of the cluster.
 
* [[Roadmap | Ambitions regarding innovation, support and administration of Anunna ]]


|}
= Miscellaneous =
* [[Mailinglist | Electronic mail discussion lists]]
* [[History_of_the_Cluster | Historical information on the startup of Anunna]]
* [[Bioinformatics_tips_tricks_workflows | Bioinformatics tips, tricks, and workflows]]
* [[Parallel_R_code_on_SLURM | Running parallel R code on SLURM]]
* [[Convert_between_MediaWiki_and_other_formats | Convert between MediaWiki format and other formats]]
* [[Manual GitLab | GitLab: Create projects and add scripts]]
* [[Monitoring_executions | Monitoring job execution]]
* [[Shared_folders | Working with shared folders in the Lustre file system]]
* [[Old_binaries | Running older binaries on the updated OS]]


== About this Wiki ==
= See also =
* [[Maintenance_and_Management | Maintenance and Management]]
* [[BCData | BCData]]
* [[Mailinglist | Electronic mail discussion lists]]
* [[About_ABGC | About ABGC]]
* [[Computer_cluster | High Performance Computing @ABGC]]
* [[Lustre_PFS_layout | Lustre Parallel File System layout]]


* [[Special:Listusers|users]]
= External links =
{| width="90%"
|- valign="top"
| width="30%" |
* [https://www.wur.nl/en/Value-Creation-Cooperation/Facilities/Wageningen-Shared-Research-Facilities/Our-facilities/Show/High-Performance-Computing-Cluster-HPC-Anunna.htm SRF offers a HPC facilty]
| width="30%" |
* [http://en.wikipedia.org/wiki/Scientific_Linux Scientific Linux]
* [http://en.wikipedia.org/wiki/Help:Cheatsheet Help with editing Wiki pages]
|}

Latest revision as of 08:51, 28 October 2024

Anunna is a High Performance Computer (HPC) infrastructure hosted by Wageningen University & Research Centre. It is open for use for all WUR research groups as well as other organizations, including companies, that have collaborative projects with WUR.

Access Policy

Main Article: Access Policy

Access needs to be granted actively (by creation of an account on the cluster by FB-IT). Use of resources is limited by the scheduler. Note that the use of Anunna is not free of charge.

Using Anunna

Gaining access to Anunna

Access to the cluster and file transfer are traditionally done via SSH and SFTP.

Using Anunna for courses

Events

  • Courses that have happened and are happening
  • Downtime that will affect all users
  • Meetings that may affect the policies of Anunna

Software

Web Apps

Other Software

Cluster Scheduler

Anunna uses Slurm as job scheduler.

Installation of software by users

Installed software

Useful Notes

Being in control of Environment parameters

Controlling costs

Management

Product Owner of Anunna is Alexander van Ittersum (Wageningen UR,FB-IT, C&PS). Fons Prinsen (Wageningen UR, FB-IT, C&PS) is responsible for Maintenance and Management of the cluster.

Miscellaneous

See also

External links

Retrieved from "https://wiki.anunna.wur.nl/index.php?title=Main_Page&oldid=2395"