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Anunna is a [http://en.wikipedia.org/wiki/High-performance_computing High Performance Computer] (HPC) infrastructure hosted by [ | Anunna is a [http://en.wikipedia.org/wiki/High-performance_computing High Performance Computer] (HPC) infrastructure hosted by [https://www.wur.nl/en/show/supercomputer-anunna-opens-up-more-opportunities-for-data-storage-and-artificial-intelligence-applications.htm Wageningen University & Research Centre]. It is open for use for all WUR research groups as well as other organizations, including companies, that have collaborative projects with WUR. | ||
= About = | |||
* [[History of the Cluster|Historical information on the startup of Anunna]] | |||
== Access Policy == | |||
[[Access_Policy | Main Article: Access Policy]] | |||
Access needs to be granted actively (by creation of an account on the cluster by FB-IT). Use of resources is limited by the scheduler. Note that the use of Anunna is not free of charge. | |||
= Our Courses = | |||
The Anunna team organizes HPC courses three times a year to strengthen basic & more advanced skills and enable users to make the most effective use of our facility. | |||
== [[Linux Basic]] == | |||
== [[HPC Basic]] == | |||
== [[HPC Advanced]] == | |||
== [[2026 Course dates]] == | |||
= Using Anunna = | = Using Anunna = | ||
| Line 11: | Line 31: | ||
* [[Filesystems | Data storage methods on Anunna]] | * [[Filesystems | Data storage methods on Anunna]] | ||
== | == Using Anunna for courses (mainly jupyter notebooks) == | ||
[[ | * [[steps_for_courses | Steps involved to run a course on Anunna]] | ||
= Events = | = Events = | ||
| Line 22: | Line 40: | ||
* [[Meetings]] that may affect the policies of Anunna | * [[Meetings]] that may affect the policies of Anunna | ||
= | = Software = | ||
* [[Modules]] | |||
* [[Apptainer]] | |||
* [[Python]] | |||
* [[R]] | |||
* [[Julia]] | |||
== Browser apps == | |||
This page provides an overview of the GUI-based applications available Anunna, including background information and practical guidance on how to access and use interactive desktops and graphical tools directly from your web browser. | |||
* [[General overview|General Overview]] | |||
* [[Anunna Shell Access]] | |||
* [[Using the File browser|File Browser]] | |||
* [[Jupyter|Featured Apps]] | |||
* [[Jupyter]] | |||
* [[RStudio|R Studio]] | |||
* [[Linux desktop|Linux Desktop]] | |||
* [[Requesting new software|Requesting New Software]] | |||
== Cluster Scheduler == | == Command-line Software == | ||
==== Cluster Scheduler ==== | |||
Anunna uses Slurm as job scheduler. | Anunna uses Slurm as job scheduler. | ||
* [[Using_Slurm | Submit jobs with Slurm]] | * [[Using_Slurm | Submit jobs with Slurm]] | ||
| Line 30: | Line 67: | ||
* [[SLURM_Compare | Rosetta Stone of Workload Managers]] | * [[SLURM_Compare | Rosetta Stone of Workload Managers]] | ||
== | ==== [[Globally installed software]] ==== | ||
==== [[ABGC_modules |ABGC specific modules]] ==== | |||
==== Installation of software by users ==== | |||
* [[Domain_specific_software_on_B4Fcluster_installation_by_users | Installing domain specific software: installation by users]] | * [[Domain_specific_software_on_B4Fcluster_installation_by_users | Installing domain specific software: installation by users]] | ||
* [[Setting local variables]] | * [[Setting local variables]] | ||
| Line 39: | Line 79: | ||
* [[Installing WRF and WPS]] | * [[Installing WRF and WPS]] | ||
* [[Running scripts on a fixed timeschedule (cron)]] | * [[Running scripts on a fixed timeschedule (cron)]] | ||
= Useful Notes = | = Useful Notes = | ||
| Line 50: | Line 85: | ||
* [[Using_environment_modules | Using environment modules]] | * [[Using_environment_modules | Using environment modules]] | ||
* [[Aliases and local variables]] | |||
* [[Setting local variables]] | * [[Setting local variables]] | ||
* [[Setting_TMPDIR | Set a custom temporary directory location]] | * [[Setting_TMPDIR | Set a custom temporary directory location]] | ||
* [[Installing_R_packages_locally | Installing R packages locally]] | * [[Installing_R_packages_locally | Installing R packages locally]] | ||
* [[Setting_up_Python_virtualenv | Setting up and using a virtual environment for Python3 ]] | * [[Setting_up_Python_virtualenv | Setting up and using a virtual environment for Python3 ]] | ||
* [[Locale_settings]] (how numbers and dates are displayed) | |||
== Controlling costs == | == Controlling costs == | ||
| Line 66: | Line 103: | ||
= Miscellaneous = | = Miscellaneous = | ||
* [[Bioinformatics_tips_tricks_workflows |Bioinformatics tips, tricks, and workflows]] | |||
* [[Bioinformatics_tips_tricks_workflows | Bioinformatics tips, tricks, and workflows]] | |||
* [[Parallel_R_code_on_SLURM | Running parallel R code on SLURM]] | * [[Parallel_R_code_on_SLURM | Running parallel R code on SLURM]] | ||
* [[Convert_between_MediaWiki_and_other_formats | Convert between MediaWiki format and other formats]] | * [[Convert_between_MediaWiki_and_other_formats | Convert between MediaWiki format and other formats]] | ||
| Line 75: | Line 110: | ||
* [[Shared_folders | Working with shared folders in the Lustre file system]] | * [[Shared_folders | Working with shared folders in the Lustre file system]] | ||
* [[Old_binaries | Running older binaries on the updated OS]] | * [[Old_binaries | Running older binaries on the updated OS]] | ||
* [[locale_settings | How to change language settings for yourself]] | |||
= See also = | = See also = | ||
* [[Maintenance_and_Management | Maintenance and Management]] | * [[Maintenance_and_Management | Maintenance and Management]] | ||
* [[About_ABGC | About ABGC]] | * [[About_ABGC | About ABGC]] | ||
* [[Computer_cluster | High Performance Computing @ABGC]] | * [[Computer_cluster | High Performance Computing @ABGC]] | ||
Latest revision as of 15:16, 25 February 2026
Anunna is a High Performance Computer (HPC) infrastructure hosted by Wageningen University & Research Centre. It is open for use for all WUR research groups as well as other organizations, including companies, that have collaborative projects with WUR.
About
Access Policy
Access needs to be granted actively (by creation of an account on the cluster by FB-IT). Use of resources is limited by the scheduler. Note that the use of Anunna is not free of charge.
Our Courses
The Anunna team organizes HPC courses three times a year to strengthen basic & more advanced skills and enable users to make the most effective use of our facility.
Linux Basic
HPC Basic
HPC Advanced
2026 Course dates
Using Anunna
Gaining access to Anunna
Access to the cluster and file transfer are traditionally done via SSH and SFTP.
- Logging into cluster using ssh
- File transfer options
- Alternative access methods, and extra features and services on Anunna
- Data storage methods on Anunna
Using Anunna for courses (mainly jupyter notebooks)
Events
- Courses that have happened and are happening
- Downtime that will affect all users
- Meetings that may affect the policies of Anunna
Software
Browser apps
This page provides an overview of the GUI-based applications available Anunna, including background information and practical guidance on how to access and use interactive desktops and graphical tools directly from your web browser.
- General Overview
- Anunna Shell Access
- File Browser
- Featured Apps
- Jupyter
- R Studio
- Linux Desktop
- Requesting New Software
Command-line Software
Cluster Scheduler
Anunna uses Slurm as job scheduler.
- Submit jobs with Slurm
- Be aware of how much work the cluster is under right now with 'node_usage_graph'
- Rosetta Stone of Workload Managers
Globally installed software
ABGC specific modules
Installation of software by users
- Installing domain specific software: installation by users
- Setting local variables
- Installing R packages locally
- Setting up and using a virtual environment for Python3
- Setting up and using a virtual environment for Python3.4 or higher
- Installing WRF and WPS
- Running scripts on a fixed timeschedule (cron)
Useful Notes
Being in control of Environment parameters
- Using environment modules
- Aliases and local variables
- Setting local variables
- Set a custom temporary directory location
- Installing R packages locally
- Setting up and using a virtual environment for Python3
- Locale_settings (how numbers and dates are displayed)
Controlling costs
Management
Product Owner of Anunna is Alexander van Ittersum (Wageningen UR,FB-IT, C&PS). Fons Prinsen (Wageningen UR, FB-IT, C&PS) is responsible for Maintenance and Management of the cluster.
Miscellaneous
- Bioinformatics tips, tricks, and workflows
- Running parallel R code on SLURM
- Convert between MediaWiki format and other formats
- GitLab: Create projects and add scripts
- Monitoring job execution
- Working with shared folders in the Lustre file system
- Running older binaries on the updated OS
- How to change language settings for yourself
See also
- Maintenance and Management
- About ABGC
- High Performance Computing @ABGC
- Lustre Parallel File System layout