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Anunna is a [http://en.wikipedia.org/wiki/High-performance_computing High Performance Computer] (HPC) infrastructure hosted by [http://www.wageningenur.nl/nl/activiteit/Opening-High-Performance-Computing-cluster-HPC.htm Wageningen University & Research Centre]. It is open for use for all WUR research groups as well as other organizations, including companies, that have collaborative projects with WUR.  
Anunna is a [http://en.wikipedia.org/wiki/High-performance_computing High Performance Computer] (HPC) infrastructure hosted by [https://www.wur.nl/en/show/supercomputer-anunna-opens-up-more-opportunities-for-data-storage-and-artificial-intelligence-applications.htm Wageningen University & Research Centre]. It is open for use for all WUR research groups as well as other organizations, including companies, that have collaborative projects with WUR.  
 
= About =
 
* [[History of the Cluster|Historical information on the startup of Anunna]]
 
== Access Policy ==
[[Access_Policy | Main Article: Access Policy]]
 
Access needs to be granted actively (by creation of an account on the cluster by FB-IT). Use of resources is limited by the scheduler. Note that the use of Anunna is not free of charge.
 
= Our Courses =
The Anunna team organizes HPC courses three times a year to strengthen basic & more advanced skills and enable users to make the most effective use of our facility.
 
== [[Linux Basic]] ==
 
== [[HPC Basic]] ==
 
== [[HPC Advanced]] ==
 
== [[2026 Course dates]] ==


= Using Anunna =
= Using Anunna =
* [[Tariffs | Costs associated with resource usage]]
== Gaining access to Anunna==
== Gaining access to Anunna==
Access to the cluster and file transfer are traditionally done via [http://en.wikipedia.org/wiki/Secure_Shell SSH and SFTP].
Access to the cluster and file transfer are traditionally done via [http://en.wikipedia.org/wiki/Secure_Shell SSH and SFTP].
* [[log_in_to_B4F_cluster | Logging into cluster using ssh and file transfer]]
* [[log_in_to_B4F_cluster | Logging into cluster using ssh]]
* [[file_transfer | File transfer options]]
* [[Services | Alternative access methods, and extra features and services on Anunna]]
* [[Services | Alternative access methods, and extra features and services on Anunna]]
* [[Filesystems | Accessible storage methods on Anunna]]
* [[Filesystems | Data storage methods on Anunna]]


== Access Policy ==
== Using Anunna for courses (mainly jupyter notebooks) ==
[[Access_Policy | Main Article: Access Policy]]
* [[steps_for_courses | Steps involved to run a course on Anunna]]
 
Access needs to be granted actively (by creation of an account on the cluster by FB-IT). Use of resources is limited by the scheduler. Depending on availability of queues ('partitions') granted to a user, priority to the system's resources is regulated. Note that the use of Anunna is not free of charge. List price of CPU time and storage, and possible discounts on that list price for your organisation, can be retrieved from CAT-AGRO or FB-ICT.
= Events =


= Events =
* [[Courses]] that have happened and are happening
* [[Courses]] that have happened and are happening
* [[Downtime]] that will affect all users
* [[Downtime]] that will affect all users
* [[Meetings]] that may affect the policies of Anunna
* [[Meetings]] that may affect the policies of Anunna


= Other Software =
= Software =
* [[Modules]]
* [[Apptainer]]
* [[Python]]
* [[R]]
* [[Julia]]


== Cluster Management Software and Scheduler ==
== Browser apps ==
Anunna uses Bright Cluster Manager software for overall cluster management, and Slurm as job scheduler.
This page provides an overview of the GUI-based applications available Anunna, including background information and practical guidance on how to access and use interactive desktops and graphical tools directly from your web browser.
* [[BCM_on_B4F_cluster | Monitor cluster status with BCM]]
 
* [[SLURM_on_B4F_cluster | Submit jobs with Slurm]]
* [[General overview|General Overview]]
* [[Anunna Shell Access]]
* [[Using the File browser|File Browser]]
* [[Jupyter|Featured Apps]]
* [[Jupyter]]
* [[RStudio|R Studio]]
* [[Linux desktop|Linux Desktop]]
* [[Requesting new software|Requesting New Software]]
 
== Command-line Software ==
 
==== Cluster Scheduler ====
Anunna uses Slurm as job scheduler.
* [[Using_Slurm | Submit jobs with Slurm]]
* [[node_usage_graph | Be aware of how much work the cluster is under right now with 'node_usage_graph']]
* [[node_usage_graph | Be aware of how much work the cluster is under right now with 'node_usage_graph']]
* [[SLURM_Compare | Rosetta Stone of Workload Managers]]
* [[SLURM_Compare | Rosetta Stone of Workload Managers]]


== Installation of software by users ==
==== [[Globally installed software]] ====


==== [[ABGC_modules |ABGC specific modules]] ====
==== Installation of software by users ====
* [[Domain_specific_software_on_B4Fcluster_installation_by_users | Installing domain specific software: installation by users]]
* [[Domain_specific_software_on_B4Fcluster_installation_by_users | Installing domain specific software: installation by users]]
* [[Setting local variables]]
* [[Setting local variables]]
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* [[Virtual_environment_Python_3.4_or_higher | Setting up and using a virtual environment for Python3.4 or higher ]]
* [[Virtual_environment_Python_3.4_or_higher | Setting up and using a virtual environment for Python3.4 or higher ]]
* [[Installing WRF and WPS]]
* [[Installing WRF and WPS]]
 
* [[Running scripts on a fixed timeschedule (cron)]]
== Installed software ==
 
* [[Globally_installed_software | Globally installed software]]
* [[ABGC_modules | ABGC specific modules]]


= Useful Notes =  
= Useful Notes =  
Line 46: Line 85:


* [[Using_environment_modules | Using environment modules]]
* [[Using_environment_modules | Using environment modules]]
* [[Aliases and local variables]]
* [[Setting local variables]]
* [[Setting local variables]]
* [[Setting_TMPDIR | Set a custom temporary directory location]]
* [[Setting_TMPDIR | Set a custom temporary directory location]]
* [[Installing_R_packages_locally | Installing R packages locally]]
* [[Installing_R_packages_locally | Installing R packages locally]]
* [[Setting_up_Python_virtualenv | Setting up and using a virtual environment for Python3 ]]
* [[Setting_up_Python_virtualenv | Setting up and using a virtual environment for Python3 ]]
* [[Locale_settings]] (how numbers and dates are displayed)


== Controlling costs ==
== Controlling costs ==
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== Management ==
== Management ==
Project Leader of Anunna is Stephen Janssen (Wageningen UR,FB-IT, Service Management). [[User:lith010 | Jan van Lith (Wageningen UR,FB-IT, Infrastructure)]], [[User:dawes001 | Gwen Dawes (Wageningen UR, FB-IT, Infrastructure)]] and [[User:vaend001 | Catharina Vaendel(Wageningen UR,FB-IT, Infrastructure)]] are responsible for [[Maintenance_and_Management | Maintenance and Management]].
Product Owner of Anunna is Alexander van Ittersum (Wageningen UR,FB-IT, C&PS). [[User: prins089 | Fons Prinsen (Wageningen UR, FB-IT, C&PS)]] is responsible for [[Maintenance_and_Management | Maintenance and Management]] of the cluster.
 
* [[Roadmap | Ambitions regarding innovation, support and administration of Anunna ]]


= Miscellaneous =
= Miscellaneous =
* [[Mailinglist | Electronic mail discussion lists]]
* [[Bioinformatics_tips_tricks_workflows |Bioinformatics tips, tricks, and workflows]]
* [[History_of_the_Cluster | Historical information on the startup of Anunna]]
* [[Bioinformatics_tips_tricks_workflows | Bioinformatics tips, tricks, and workflows]]
* [[Parallel_R_code_on_SLURM | Running parallel R code on SLURM]]
* [[Parallel_R_code_on_SLURM | Running parallel R code on SLURM]]
* [[Convert_between_MediaWiki_and_other_formats | Convert between MediaWiki format and other formats]]
* [[Convert_between_MediaWiki_and_other_formats | Convert between MediaWiki format and other formats]]
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* [[Monitoring_executions | Monitoring job execution]]
* [[Monitoring_executions | Monitoring job execution]]
* [[Shared_folders | Working with shared folders in the Lustre file system]]
* [[Shared_folders | Working with shared folders in the Lustre file system]]
* [[Old_binaries | Running older binaries on the updated OS]]
* [[locale_settings | How to change language settings for yourself]]


= See also =
= See also =
* [[Maintenance_and_Management | Maintenance and Management]]
* [[Maintenance_and_Management | Maintenance and Management]]
* [[BCData | BCData]]
* [[Mailinglist | Electronic mail discussion lists]]
* [[About_ABGC | About ABGC]]
* [[About_ABGC | About ABGC]]
* [[Computer_cluster | High Performance Computing @ABGC]]
* [[Computer_cluster | High Performance Computing @ABGC]]
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|- valign="top"
|- valign="top"
| width="30%" |
| width="30%" |
* [http://www.breed4food.com/en/show/Breed4Food-initiative-reinforces-the-Netherlands-position-as-an-innovative-country-in-animal-breeding-and-genomics.htm Breed4Food programme]
* [https://www.wur.nl/en/Value-Creation-Cooperation/Facilities/Wageningen-Shared-Research-Facilities/Our-facilities/Show/High-Performance-Computing-Cluster-HPC-Anunna.htm SRF offers a HPC facilty]
* [http://www.wageningenur.nl/en/Expertise-Services/Facilities/CATAgroFood-3/CATAgroFood-3/Our-facilities/Show/High-Performance-Computing-Cluster-HPC.htm CATAgroFood offers a HPC facilty]
* [http://www.cobb-vantress.com Cobb-Vantress homepage]
 
| width="30%" |
* [https://www.crv4all.nl CRV homepage]
* [http://www.hendrix-genetics.com Hendrix Genetics homepage]
* [http://www.topigs.com TOPIGS homepage]
| width="30%" |
| width="30%" |
* [http://en.wikipedia.org/wiki/Scientific_Linux Scientific Linux]
* [http://en.wikipedia.org/wiki/Scientific_Linux Scientific Linux]
* [http://en.wikipedia.org/wiki/Help:Cheatsheet Help with editing Wiki pages]
* [http://en.wikipedia.org/wiki/Help:Cheatsheet Help with editing Wiki pages]
|}
|}

Latest revision as of 15:16, 25 February 2026

Anunna is a High Performance Computer (HPC) infrastructure hosted by Wageningen University & Research Centre. It is open for use for all WUR research groups as well as other organizations, including companies, that have collaborative projects with WUR.

About

Access Policy

Main Article: Access Policy

Access needs to be granted actively (by creation of an account on the cluster by FB-IT). Use of resources is limited by the scheduler. Note that the use of Anunna is not free of charge.

Our Courses

The Anunna team organizes HPC courses three times a year to strengthen basic & more advanced skills and enable users to make the most effective use of our facility.

Linux Basic

HPC Basic

HPC Advanced

2026 Course dates

Using Anunna

Gaining access to Anunna

Access to the cluster and file transfer are traditionally done via SSH and SFTP.

Using Anunna for courses (mainly jupyter notebooks)

Events

  • Courses that have happened and are happening
  • Downtime that will affect all users
  • Meetings that may affect the policies of Anunna

Software

Browser apps

This page provides an overview of the GUI-based applications available Anunna, including background information and practical guidance on how to access and use interactive desktops and graphical tools directly from your web browser.

Command-line Software

Cluster Scheduler

Anunna uses Slurm as job scheduler.

Globally installed software

ABGC specific modules

Installation of software by users

Useful Notes

Being in control of Environment parameters

Controlling costs

Management

Product Owner of Anunna is Alexander van Ittersum (Wageningen UR,FB-IT, C&PS). Fons Prinsen (Wageningen UR, FB-IT, C&PS) is responsible for Maintenance and Management of the cluster.

Miscellaneous

See also

External links

Retrieved from "https://wiki.anunna.wur.nl/index.php?title=Main_Page&oldid=2638"