Genewise 2.2.3

Compares a protein sequence to a genomic DNA sequence, allowing for introns and frameshifting errors.

Module file

The module file can be found in this location:

 /cm/shared/apps/WUR/ABGC/modulefiles

<source lang='tcl'>

1. %Module1.0#######################################################################
   1. genewise 2.2.3-rc7 modulefile

proc ModulesHelp { } {

       puts stderr "\tAdds genewise 2.2.3 to your environment"

}

module-whatis "Adds genewise 2.2.3 to your environment"

set genewise_223_root /cm/shared/apps/WUR/ABGC/genewise/wise2.2.3-rc7/src/bin/ set genewise_conf /cm/shared/apps/WUR/ABGC/genewise/wise2.2.3-rc7/wisecfg

prepend-path PATH $genewise_223_root prepend-path WISECONFIGDIR $genewise_conf

Installation details

Compiled from source. Some problems compiling due to glib dependencies. Resolved by using the system-wide glib1.2 libraries, in combination with gcc 4.8.

</source>

See also

• Globally installed software
• ABGC specific modules

External links

• Genewise at EBI