ABGC modules

All ABGC modules can be found in:

 /cm/shared/apps/WUR/ABGC/modulefiles

Modules available for ABGC

• asreml/3.0fl-64
• augustus/2.7
• BLAST+/2.2.28
• blat/v35
• bwa/0.5.9
• bwa/0.7.5a
• cegma/2.4
• exonerate/2.2.0-x86_64
• geneid/1.4.4
• genewise/2.2.3-rc7
• hmmer/3.1b1
• maker/2.28
• Perl/5.10.1_wur
• R/3.0.2_wur
• RepeatMasker/4.0.3
• RepeatModeler/1.0.7
• snap/2013-11-29

Adding a custom module directory to your environment

To allow the module program to find the custom module directory, the location of that directory has to be added to MODULEPATH variable.

export MODULEPATH=$MODULEPATH:/cm/shared/apps/WUR/ABGC/modulefiles

This can be made permanent by adding this line of code to the .bash_profile file in the root of your home folder. To then load the modified MODULEPATH variable you have to load .bash_profile again:

source .bash_profile

This needs to be done only once. Next time you login, .bash_profile will be loaded automatically.

You can check if the modules are found.

module avail

This should give output that includes something similar to this:

 ----------------------------------- /cm/shared/apps/WUR/ABGC/modulefiles -----------------------------------
 bwa/0.5.9  bwa/0.7.5a