Bioinformatics tips tricks workflows

This page is intended as a portal to pages concerning best practices, workflows and pipelines, and other protocols (including scripts).

A list of tutorials, workflows, and recipes

• Mapping Illumina GA2/HiSeq reads to the Sus scrofa genome assembly
• A Perl script to convert fastq to fasta file format
• Mapping Pair-end reads with Stampy
• Create slices from a collection of BAM files
• Setting up and using a virtual environment for Python3
• ssh without password
• Create a shortcut for the ssh log-in command
• Installing R packages locally
• Animal Breeding and Genomics Sequence Archives (ABGSA)
• Short read mapping pipeline for the pig project
• 1000 Bulls mapping pipeline at ABGC
• Command-line tricks for manipulating fastq files

See also

• B4F Cluster