Bioinformatics protocols ABG Chairgroup
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This page is intended as a portal to pages concerning best practices, workflows and pipelines, and other protocols (including scripts).
A list of tutorials, workflows, and recipes
- Mapping Illumina GA2/HiSeq reads to the Sus scrofa genome assembly
- A Perl script to convert fastq to fasta file format
- Setup Printers on Ubuntu Machines
- Mapping Pair-end reads with Stampy
- Create slices from a collection of BAM files
- Setting up and using a virtual environment for Python3
- ssh without password
- Create a shortcut for the ssh log-in command
- Installing R packages locally
- Animal Breeding and Genomics Sequence Archives (ABGSA)
- Short read mapping pipeline for the pig project
- 1000 Bulls mapping pipeline at ABGC