Soapdenovo2 r240
BLAT (BLAST-like alignment tool) is a pairwise sequence alignment algorithm that was developed by Jim Kent at the University of California Santa Cruz (UCSC) in the early 2000s to assist in the assembly and annotation of the Human Genome.
Module file
The module file can be found in this location:
/cm/shared/modulefiles/SHARED/
<source lang='tcl'>#%Module1.0#######################################################################
- SOAPdenovo2 r240 modulefile
proc ModulesHelp { } {
puts stderr "\tAdds SOAPdenovo2 r240 to your environment"
}
module-whatis "Adds SOAPdenovo2 r240 to your environment"
set soapdenovo2_r240_root /cm/shared/apps/SHARED/SOAPdenovo2/SOAPdenovo2-bin-LINUX-generic-r240/
prepend-path PATH $soapdenovo2_r240_root
</source>
Installation details
The entire suite of binaries/executable was downloaded on 20-12-2013: <source lang='bash'> rsync -aP rsync://hgdownload.cse.ucsc.edu/genome/admin/exe/linux.x86_64/ ./ </source>
See also
External links
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