User contributions for Moiti001

18 July 2022

• 14:4614:46, 18 July 2022 diff hist 0‎ N File:Whole-genome-alignment-workflow.png ‎No edit summary current
• 14:4614:46, 18 July 2022 diff hist +3,628‎ N Whole genome alignment pipeline ‎ added documentation
• 14:4114:41, 18 July 2022 diff hist +72‎ m Bioinformatics tips tricks workflows ‎ added whole genome alignment pipeline page current
• 10:0310:03, 18 July 2022 diff hist 0‎ N File:Single-cell-processing-workflow.png ‎No edit summary current
• 10:0210:02, 18 July 2022 diff hist −51‎ Single Cell preprocessing pipeline ‎No edit summary current
• 09:5409:54, 18 July 2022 diff hist +20,739‎ N Single Cell preprocessing pipeline ‎ added documentation

13 June 2022

• 15:3615:36, 13 June 2022 diff hist +88‎ m Nanopore assembly and variant calling ‎ added link to github repo current
• 15:3415:34, 13 June 2022 diff hist +190‎ m Population variant calling pipeline ‎ added author info
• 15:2515:25, 13 June 2022 diff hist +17‎ m Bioinformatics tips tricks workflows ‎No edit summary
• 15:2115:21, 13 June 2022 diff hist +60‎ m Bioinformatics tips tricks workflows ‎ added single cell page

2 March 2022

• 15:1815:18, 2 March 2022 diff hist +2,265‎ Population variant calling pipeline ‎ added info on how to configure VEP and install R packages
• 14:4514:45, 2 March 2022 diff hist 0‎ N File:Population-var-calling-workflow.png ‎No edit summary current
• 14:4514:45, 2 March 2022 diff hist −39‎ m Population variant calling pipeline ‎ added workflow image
• 14:4314:43, 2 March 2022 diff hist +3,740‎ N Population variant calling pipeline ‎ added info on pipeline
• 14:3614:36, 2 March 2022 diff hist −9‎ m Bioinformatics tips tricks workflows ‎ fixed nanopore assembly pipeline page link
• 14:3314:33, 2 March 2022 diff hist +97‎ m Bioinformatics tips tricks workflows ‎ added page for population variant calling pipeline

5 January 2022

• 12:2512:25, 5 January 2022 diff hist +901‎ m Running Snakemake pipelines ‎ added info on how to install miniconda current

22 November 2021

• 12:5612:56, 22 November 2021 diff hist +721‎ m Mapping and variant calling pipeline ‎ info on how to concatenate fq files current

4 November 2021

• 09:4409:44, 4 November 2021 diff hist +338‎ m Nanopore assembly and variant calling ‎ added info about variant calling filtering

1 November 2021

• 11:0311:03, 1 November 2021 diff hist 0‎ File:Nanopore-assembly-workflow.png ‎ Moiti001 uploaded a new version of File:Nanopore-assembly-workflow.png current
• 11:0311:03, 1 November 2021 diff hist +141‎ m Nanopore assembly and variant calling ‎ added info on var calling with short reads
• 10:3810:38, 1 November 2021 diff hist +94‎ m Mapping and variant calling pipeline ‎ changed mapping tool

29 October 2021

• 09:3809:38, 29 October 2021 diff hist 0‎ N File:Nanopore-assembly-workflow.png ‎No edit summary
• 09:3709:37, 29 October 2021 diff hist +6,937‎ N Nanopore assembly and variant calling ‎ added info about nanopore pipeline

28 October 2021

• 09:5009:50, 28 October 2021 diff hist +409‎ m Population structural variant calling pipeline ‎ added info about split read support option
• 09:4309:43, 28 October 2021 diff hist 0‎ File:Pop-sv-calling-workflow.png ‎ Moiti001 uploaded a new version of File:Pop-sv-calling-workflow.png current

22 October 2021

• 12:4812:48, 22 October 2021 diff hist +49‎ N File:Mapping-variant-calling-workflow.png ‎ workflow for mapping and variant calling pipeline current
• 12:4612:46, 22 October 2021 diff hist +147‎ m Mapping and variant calling pipeline ‎ added pipeline workflow, small details

15 October 2021

• 12:4912:49, 15 October 2021 diff hist +123‎ m Population structural variant calling pipeline ‎ added new config parameter - num of chrs
• 10:1510:15, 15 October 2021 diff hist +84‎ m Bioinformatics tips tricks workflows ‎ added nanopore assembly pipeline page

8 October 2021

• 13:5713:57, 8 October 2021 diff hist +3‎ m Running Snakemake pipelines ‎No edit summary
• 13:5213:52, 8 October 2021 diff hist +794‎ Population structural variant calling pipeline ‎No edit summary
• 10:4210:42, 8 October 2021 diff hist +118‎ Population structural variant calling pipeline ‎ added tip on how to define sample name for sample list file
• 10:2010:20, 8 October 2021 diff hist +700‎ Population structural variant calling pipeline ‎ added info about installing R packages

29 September 2021

• 13:5513:55, 29 September 2021 diff hist −41‎ m Population mapping pipeline ‎ added workflow image current
• 13:5113:51, 29 September 2021 diff hist +50‎ N File:Population-mapping-workflow.png ‎ workflow for population mapping snakemake pipeline current
• 13:4913:49, 29 September 2021 diff hist +3,439‎ N Population mapping pipeline ‎ added info about pipeline
• 13:4213:42, 29 September 2021 diff hist +64‎ Bioinformatics tips tricks workflows ‎ added page for population mapping pipeline

22 September 2021

• 12:3912:39, 22 September 2021 diff hist +5,607‎ N Population structural variant calling pipeline ‎ added info about population SV calling pipeline
• 12:3012:30, 22 September 2021 diff hist +57‎ N File:Pop-sv-calling-workflow.png ‎ population structural variation calling pipeline workflow
• 12:1912:19, 22 September 2021 diff hist +102‎ m Bioinformatics tips tricks workflows ‎ →‎A list of tutorials, workflows, and recipes

1 July 2021

• 14:3814:38, 1 July 2021 diff hist +105‎ m Running Snakemake pipelines ‎No edit summary
• 09:0309:03, 1 July 2021 diff hist +8‎ Running Snakemake pipelines ‎No edit summary
• 07:3907:39, 1 July 2021 diff hist +271‎ Running Snakemake pipelines ‎No edit summary

30 June 2021

• 15:2415:24, 30 June 2021 diff hist +3,317‎ N Running Snakemake pipelines ‎ Created page with "Author: Carolina Pita Barros <br/> Contact: carolina.pitabarros@wur.nl <br/> ABG <br/><br/> You can find my pipelines [https://github.com/CarolinaPB/ here] The Snakemake sha..."
• 15:1915:19, 30 June 2021 diff hist +64‎ Bioinformatics tips tricks workflows ‎No edit summary
• 15:1815:18, 30 June 2021 diff hist +18‎ m Mapping and variant calling pipeline ‎No edit summary
• 15:1715:17, 30 June 2021 diff hist +4‎ Mapping and variant calling pipeline ‎No edit summary
• 15:1615:16, 30 June 2021 diff hist +1,690‎ N Mapping and variant calling pipeline ‎ This is a pipeline to map short reads to a reference assembly. It outputs the mapped reads, a qualimap report and does variant calling.
• 15:0915:09, 30 June 2021 diff hist +82‎ Bioinformatics tips tricks workflows ‎ →‎A list of tutorials, workflows, and recipes