User contributions for Megen002
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20 December 2013
- 01:2501:25, 20 December 2013 diff hist +45 List of users No edit summary
13 December 2013
- 00:2300:23, 13 December 2013 diff hist +285 N Obfuscating runs Created page with "<source lang='bash'> #!/bin/bash #SBATCH --exclusive #SBATCH --nodes=1 #SBATCH --mem=10000 #SBATCH --comment="cv testjob" #SBATCH -p student RND=`< /dev/urandom tr -dc _A-Z-a..." current
12 December 2013
- 23:4023:40, 12 December 2013 diff hist +38 MPI on B4F cluster No edit summary
- 23:3923:39, 12 December 2013 diff hist +581 MPI on B4F cluster No edit summary
- 23:3423:34, 12 December 2013 diff hist 0 MPI on B4F cluster No edit summary
- 23:3323:33, 12 December 2013 diff hist +2 MPI on B4F cluster No edit summary
- 23:3223:32, 12 December 2013 diff hist +612 MPI on B4F cluster No edit summary
- 23:3023:30, 12 December 2013 diff hist +1,189 N MPI on B4F cluster Created page with " module list module purge module load gcc/4.8.1 openmpi/gcc/64/1.6.5 slurm/2.5.7 mpicc hello_mpi.c -o test_hello_world ldd test_hello_world linux-vdso.so.1 => (0x00002a..."
- 23:2323:23, 12 December 2013 diff hist +59 Using Slurm →Running MPI jobs on B4F cluster
- 23:1823:18, 12 December 2013 diff hist +64 Using Slurm →See also
11 December 2013
- 12:3612:36, 11 December 2013 diff hist −69 User:Megen002 No edit summary
- 00:3500:35, 11 December 2013 diff hist +508 Using environment modules No edit summary
- 00:3100:31, 11 December 2013 diff hist +829 N Using environment modules Created page with "<-- this is only preliminary text; this article needs more work --> === Example === Consider this simple python3 script that should calculate Pi to 1 million digits: <source ..."
- 00:2900:29, 11 December 2013 diff hist −2 Using Slurm →Query a specific active job: scontrol
9 December 2013
- 00:5100:51, 9 December 2013 diff hist +124 List of users No edit summary
- 00:4900:49, 9 December 2013 diff hist +46 N List of users Created page with " Hendrik-Jan Megens (ABGC)"
- 00:4900:49, 9 December 2013 diff hist −35 Main Page →Management
- 00:4800:48, 9 December 2013 diff hist +94 Main Page →User Group
- 00:4700:47, 9 December 2013 diff hist 0 Main Page →Animal Breeding and Genetics
- 00:4600:46, 9 December 2013 diff hist +5 Main Page →IT Workgroup
- 00:4300:43, 9 December 2013 diff hist +15 Main Page →IT Workgroup
- 00:1800:18, 9 December 2013 diff hist −236 Bioinformatics tips tricks workflows →A list of tutorials, workflows, and recipes
8 December 2013
- 15:4815:48, 8 December 2013 diff hist +17 Main Page →External links
- 15:4715:47, 8 December 2013 diff hist +66 Main Page →External links
- 15:4315:43, 8 December 2013 diff hist +218 Main Page →Nodes
- 15:4015:40, 8 December 2013 diff hist +47 Main Page →Nodes
- 15:0115:01, 8 December 2013 diff hist +32 Setting local variables →Adding custom directories to the system PATH
- 15:0015:00, 8 December 2013 diff hist +30 Setting local variables →Increase number of commands remembered in the history
- 15:0015:00, 8 December 2013 diff hist +331 Setting local variables →Modify .bashrc and .bash_profile
- 14:5614:56, 8 December 2013 diff hist +90 Main Page →Using the B4F Cluster
- 14:5514:55, 8 December 2013 diff hist +161 Main Page →Using the B4F Cluster
- 14:5414:54, 8 December 2013 diff hist +397 Setting TMPDIR No edit summary
- 14:4914:49, 8 December 2013 diff hist +134 Setting TMPDIR No edit summary
- 14:4714:47, 8 December 2013 diff hist +599 Setting TMPDIR No edit summary
- 14:4314:43, 8 December 2013 diff hist +693 Setting TMPDIR No edit summary
- 14:3714:37, 8 December 2013 diff hist +155 N Setting TMPDIR Created page with " <source lang='bash'> mkdir /lustre/scratch/WUR/ABGC/[user]/tmp </source> <source lang='bash'> export TMPDIR=/lustre/scratch/WUR/ABGC/[user]/tmp </source>"
- 14:3614:36, 8 December 2013 diff hist +118 Main Page →Using the B4F Cluster
- 14:2714:27, 8 December 2013 diff hist +4 User:Megen002 →Hendrik-Jan Megens
- 14:2714:27, 8 December 2013 diff hist +81 User:Megen002 No edit summary
- 14:1614:16, 8 December 2013 diff hist +26 User:Megen002 No edit summary
- 14:1614:16, 8 December 2013 diff hist +1,747 N User:Megen002 Created page with "Profile on [http://www.linkedin.com/pub/hendrik-jan-megens/24/536/2b8 LinkedIn] Senior Researcher and lecturer at Wageningen University, Animal Breeding and Genomics Centre. ..."
- 12:2512:25, 8 December 2013 diff hist +566 N Command line tricks for manipulating fastq Created page with "== Extracting a sequence based on read name == <source lang='bash'> gunzip -c reads.fq.gz | sed -n '/readname/,+3 p' </source> == From BAM/SAM to fastq == <source lang='bas..." current
- 12:2512:25, 8 December 2013 diff hist +1,195 N Bioinformatics tips tricks workflows Created page with "This page is intended as a portal to pages concerning best practices, workflows and pipelines, and other protocols (including scripts). == A list of tutorials, workflows, and..."
- 12:2312:23, 8 December 2013 diff hist +109 Main Page →Using the B4F Cluster
- 12:2212:22, 8 December 2013 diff hist +88 Installing R packages locally →See also