Cegma 2.4
CEGMA (Core Eukaryotic Genes Mapping Approach) is a pipeline for building a set of high reliable set of gene annotations in virtually any eukaryotic genome. The strategy relies on a simple fact: some highly conserved proteins are encoded in essentially all eukaryotic genomes.
Module file
The module file can be found in this location:
/cm/shared/modulefiles/SHARED/
<source lang='tcl'>
- %Module1.0#######################################################################
- cegma 2.4 modulefile
proc ModulesHelp { } {
puts stderr "\tAdds cegma 2.4 to your environment"
}
module-whatis "Adds cegma 2.4 to your environment"
module load BLAST+/2.2.28 genewise/2.2.3-rc7 geneid/1.4.4 hmmer/3.1b1
setenv CEGMA /cm/shared/apps/SHARED/cegma/cegma_v2.4.010312/
set cegma_24_root /cm/shared/apps/SHARED/cegma_v2.4.010312/bin/ set cegma_24_perllib /cm/shared/apps/SHARED/cegma/cegma_v2.4.010312/lib/
prepend-path PATH $cegma_24_root prepend-path PERL5LIB $cegma_24_perllib
</source>
Installation details
Cegma was built from source, per the installation instructions provided.
See also
- Globally installed software
- ABGC specific modules
- BLAST+/2.2.28
- geneid/1.4.4
- genewise/2.2.3-rc7
- hmmer/3.1b1