ABGC modules

All ABGC modules can be found in:

 /cm/shared/apps/WUR/ABGC/modulefiles

Modules available for ABGC

• asreml/3.0fl-64
• asreml/4.0kr
• asreml/4.1.0
• Perl/5.10.1_wur
• R/3.0.2_wur

Adding a custom module directory to your environment

To allow the module program to find the custom module directory, the location of that directory has to be added to MODULEPATH variable.

<source lang='bash'> export MODULEPATH=$MODULEPATH:/cm/shared/apps/WUR/ABGC/modulefiles </source> This can be made permanent by adding this line of code to the .bash_profile file in the root of your home folder. To then load the modified MODULEPATH variable you have to load .bash_profile again: <source lang='bash'> source .bash_profile </source> This needs to be done only for terminals that are already open. Next time you login, .bash_profile will be loaded automatically.

You can check if the modules are found. <source lang='bash'> module avail </source> This should give output that includes something similar to this:

 ----------------------------------- /cm/shared/apps/WUR/ABGC/modulefiles -----------------------------------
 bwa/0.5.9  bwa/0.7.5a

See also

• Globally installed software
• Installing domain specific software: installation by users
• Setting local variables
• Installing R packages locally
• Setting up and using a virtual environment for Python3