Installation by users

Domain specific folders for executables and libraries

Many packages and applications can be installed locally in the $HOME directory. Users of each of the groups (e.g. 'WUR/ABGC') can deposit a map with executables or library files that can be of interest to multiple users

 /cm/shared/apps/WUR/ABGC/

Preparing modules for local or domain specific use

<source lang='tcl'>

1. %Module1.0#######################################################################
   1. bwa 0.5.9 modulefile

proc ModulesHelp { } {

       puts stderr "\tAdds bwa v0.5.9 to your environment"

}

module-whatis "Adds bwa v0.5.9 to your environment"

set bwa_059_root /cm/shared/apps/WUR/ABGC/bwa/bwa-0.5.9/

prepend-path PATH $bwa_059_root

</source> < text here > <source lang='bash'> export MODULEPATH=$MODULEPATH:/cm/shared/apps/WUR/ABGC/modulesfiles </source> <source lang='bash'> source .bash_profile </source>

See also

• B4F Cluster
• Lx6 and Lx7 compute nodes
• Environment Modules
• Create a shortcut for the ssh log-in command
• Installing R packages locally

External links

http://modules.sourceforge.net http://www.admin-magazine.com/HPC/Articles/Environment-Modules