Allpathslg 48961: Difference between revisions
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module load gcc/4.8.1 | module load gcc/4.8.1 | ||
set allpathslg_48961_root /cm/shared/apps/SHARED/ALLPATHS-LG/allpathslg-48961/program/ | set allpathslg_48961_root /cm/shared/apps/SHARED/ALLPATHS-LG/allpathslg-48961/program/bin/ | ||
prepend-path PATH $allpathslg_48961_root | prepend-path PATH $allpathslg_48961_root | ||
Revision as of 14:41, 15 March 2014
ALLPATHS-LG is a popular genome assembler.
Module file
The module file can be found in this location:
/cm/shared/modulefiles/SHARED/
<source lang='tcl'>
- %Module1.0#######################################################################
- maker ALLPATHS-LG (48961 modulefile
proc ModulesHelp { } {
puts stderr "\tAdds ALLPATHS-LG (48961) to your environment"
}
module-whatis "Adds ALLPATHS-LG (48961) to your environment"
module load gcc/4.8.1
set allpathslg_48961_root /cm/shared/apps/SHARED/ALLPATHS-LG/allpathslg-48961/program/bin/
prepend-path PATH $allpathslg_48961_root
</source>
Installation details
ALLPATHS-LG was compiled from source (using gcc4.8) on 15-03-2014: Source was downloaded by choosing the 'latests' link from here: http://www.broadinstitute.org/software/allpaths-lg/blog/?page_id=12