Genewise 2.2.3: Difference between revisions
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Compares a protein sequence to a genomic DNA sequence, allowing for introns and frameshifting errors. | |||
== Module file == | == Module file == | ||
The module file can be found in this location: | The module file can be found in this location: | ||
/cm/shared/ | /cm/shared/modulefiles/SHARED/ | ||
< | <pre> | ||
#%Module1.0####################################################################### | #%Module1.0####################################################################### | ||
## genewise 2.2.3-rc7 modulefile | ## genewise 2.2.3-rc7 modulefile | ||
| Line 15: | Line 17: | ||
module-whatis "Adds genewise 2.2.3 to your environment" | module-whatis "Adds genewise 2.2.3 to your environment" | ||
set genewise_223_root /cm/shared/apps/ | set genewise_223_root /cm/shared/apps/SHARED/genewise/wise2.2.3-rc7/src/bin/ | ||
set genewise_conf /cm/shared/apps/ | set genewise_conf /cm/shared/apps/SHARED/genewise/wise2.2.3-rc7/wisecfg | ||
| Line 22: | Line 24: | ||
prepend-path WISECONFIGDIR $genewise_conf | prepend-path WISECONFIGDIR $genewise_conf | ||
== Installation details == | |||
Compiled from source. Some problems compiling due to glib dependencies. Resolved by using the system-wide glib1.2 libraries, in combination with gcc 4.8. | |||
</ | </pre> | ||
== See also == | == See also == | ||
| Line 31: | Line 34: | ||
== External links == | == External links == | ||
* [http:// | * [http://www.ebi.ac.uk/Tools/psa/genewise/help/ Genewise at EBI] | ||
Latest revision as of 14:49, 15 June 2023
Compares a protein sequence to a genomic DNA sequence, allowing for introns and frameshifting errors.
Module file
The module file can be found in this location:
/cm/shared/modulefiles/SHARED/
#%Module1.0#######################################################################
## genewise 2.2.3-rc7 modulefile
##
proc ModulesHelp { } {
puts stderr "\tAdds genewise 2.2.3 to your environment"
}
module-whatis "Adds genewise 2.2.3 to your environment"
set genewise_223_root /cm/shared/apps/SHARED/genewise/wise2.2.3-rc7/src/bin/
set genewise_conf /cm/shared/apps/SHARED/genewise/wise2.2.3-rc7/wisecfg
prepend-path PATH $genewise_223_root
prepend-path WISECONFIGDIR $genewise_conf
== Installation details ==
Compiled from source. Some problems compiling due to glib dependencies. Resolved by using the system-wide glib1.2 libraries, in combination with gcc 4.8.