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Anunna is a [http://en.wikipedia.org/wiki/High-performance_computing High Performance Computer] (HPC) infrastructure hosted by [http://www.wageningenur.nl/nl/activiteit/Opening-High-Performance-Computing-cluster-HPC.htm Wageningen University & Research Centre]. It is open for use for all WUR research groups as well as other organizations, including companies, that have collaborative projects with WUR.  
Anunna is a [http://en.wikipedia.org/wiki/High-performance_computing High Performance Computing] (HPC) cluster hosted by [https://www.wur.nl/ Wageningen University & Research]. It is open to all WUR research groups, and to other organisations and companies running collaborative projects with WUR.


= Using Anunna =
You reach the cluster over [[SSH Access|SSH]] at <code>login.anunna.wur.nl</code>, or through your browser at the [[Apps Portal]] (https://apps.anunna.wur.nl/).
== Gaining access to Anunna==
Access to the cluster and file transfer are traditionally done via [http://en.wikipedia.org/wiki/Secure_Shell SSH and SFTP].
* [[log_in_to_B4F_cluster | Logging into cluster using ssh and file transfer]]
* [[Services | Alternative access methods, and extra features and services on Anunna]]
* [[Filesystems | Accessible storage methods on Anunna]]


== Access Policy ==
== Documentation ==
[[Access_Policy | Main Article: Access Policy]]


Access needs to be granted actively (by creation of an account on the cluster by FB-IT). Use of resources is limited by the scheduler. Depending on availability of queues ('partitions') granted to a user, priority to the system's resources is regulated. Note that the use of Anunna is not free of charge. List price of CPU time and storage, and possible discounts on that list price for your organisation, can be retrieved from CAT-AGRO or FB-ICT.
=== Start here ===


= Events =
* [[About]] — what Anunna is, how it is built and run, and the policies that apply
* [[Courses]] that have happened and are happening
* [[Get Started]] — eligibility, getting an account, and logging in
* [[Downtime]] that will affect all users
* [[Glossary of Terms]] — common HPC and Anunna terms explained
* [[Meetings]] that may affect the policies of Anunna


= Other Software =
=== Using the cluster ===


== Cluster Management Software and Scheduler ==
* [[System Access]] — login and compute nodes, filesystems, data transfer
Anunna uses Bright Cluster Manager software for overall cluster management, and Slurm as job scheduler.
* [[Scheduling]] — submitting and managing jobs with SLURM
* [[BCM_on_B4F_cluster | Monitor cluster status with BCM]]
* [[Software]] — modules, languages, containers, and licensed software
* [[SLURM_on_B4F_cluster | Submit jobs with Slurm]]
* [[Storage]] — the storage tiers and how data is kept and protected
* [[node_usage_graph | Be aware of how much work the cluster is under right now with 'node_usage_graph']]
* [[Apps Portal]] — graphical applications and desktops in your browser
* [[SLURM_Compare | Rosetta Stone of Workload Managers]]
* [[Workflows]] — reproducible, efficient research workflows


== Installation of software by users ==
=== Help and more ===


* [[Domain_specific_software_on_B4Fcluster_installation_by_users | Installing domain specific software: installation by users]]
* [[Training]] — courses, tutorials, and reference material
* [[Setting local variables]]
* [[Support]] — getting help, reporting problems, and cluster status
* [[Installing_R_packages_locally | Installing R packages locally]]
* [[For PIs]] — projects, allocations, and group management for group leaders
* [[Setting_up_Python_virtualenv | Setting up and using a virtual environment for Python3 ]]
* [[Virtual_environment_Python_3.4_or_higher | Setting up and using a virtual environment for Python3.4 or higher ]]
* [[Installing WRF and WPS]]


== Installed software ==
== Quick links ==


* [[Globally_installed_software | Globally installed software]]
* [[How to Get Help]] — contact the HPC team
* [[ABGC_modules | ABGC specific modules]]
* [[Tariffs]] — costs of using Anunna
* [[Maintenance Schedule]] — planned downtimes


= Useful Notes =  
== External links ==


== Being in control of Environment parameters ==
* [https://www.wur.nl/en/Value-Creation-Cooperation/Facilities/Wageningen-Shared-Research-Facilities/Our-facilities/Show/High-Performance-Computing-Cluster-HPC-Anunna.htm Wageningen Shared Research Facilities — HPC]
 
* [[Using_environment_modules | Using environment modules]]
* [[Setting local variables]]
* [[Setting_TMPDIR | Set a custom temporary directory location]]
* [[Installing_R_packages_locally | Installing R packages locally]]
* [[Setting_up_Python_virtualenv | Setting up and using a virtual environment for Python3 ]]
 
== Controlling costs ==
 
* [[SACCT | using SACCT to see your costs]]
* [[get_my_bill | using the "get_my_bill" script to estimate costs]]
 
== Management ==
[[Anunna | Main Article: Anunna management]]
 
Project Leader of Anunna is Stephen Janssen (Wageningen UR,FB-IT, Service Management). [[User:lith010 | Jan van Lith (Wageningen UR,FB-IT, Infrastructure)]], [[User:dawes001 | Gwen Dawes (Wageningen UR, FB-IT, Infrastructure)]] and [[User:vaend001 | Catharina Vaendel(Wageningen UR,FB-IT, Infrastructure)]] are responsible for [[Maintenance_and_Management | Maintenance and Management]].
 
= Miscellaneous =
* [[Mailinglist | Electronic mail discussion lists]]
* [[History_of_the_Cluster | Historical information on the startup of Anunna]]
* [[Bioinformatics_tips_tricks_workflows | Bioinformatics tips, tricks, and workflows]]
* [[Parallel_R_code_on_SLURM | Running parallel R code on SLURM]]
* [[Convert_between_MediaWiki_and_other_formats | Convert between MediaWiki format and other formats]]
* [[Manual GitLab | GitLab: Create projects and add scripts]]
* [[Monitoring_executions | Monitoring job execution]]
* [[Shared_folders | Working with shared folders in the Lustre file system]]
 
= See also =
* [[Maintenance_and_Management | Maintenance and Management]]
* [[BCData | BCData]]
* [[Mailinglist | Electronic mail discussion lists]]
* [[About_ABGC | About ABGC]]
* [[Computer_cluster | High Performance Computing @ABGC]]
* [[Lustre_PFS_layout | Lustre Parallel File System layout]]
 
= External links =
{| width="90%"
|- valign="top"
| width="30%" |
* [http://www.breed4food.com/en/show/Breed4Food-initiative-reinforces-the-Netherlands-position-as-an-innovative-country-in-animal-breeding-and-genomics.htm Breed4Food programme]
* [http://www.wageningenur.nl/en/Expertise-Services/Facilities/CATAgroFood-3/CATAgroFood-3/Our-facilities/Show/High-Performance-Computing-Cluster-HPC.htm CATAgroFood offers a HPC facilty]
* [http://www.cobb-vantress.com Cobb-Vantress homepage]
 
| width="30%" |
* [https://www.crv4all.nl CRV homepage]
* [http://www.hendrix-genetics.com Hendrix Genetics homepage]
* [http://www.topigs.com TOPIGS homepage]
| width="30%" |
* [http://en.wikipedia.org/wiki/Scientific_Linux Scientific Linux]
* [http://en.wikipedia.org/wiki/Help:Cheatsheet Help with editing Wiki pages]
|}

Latest revision as of 12:28, 19 June 2026

Anunna is a High Performance Computing (HPC) cluster hosted by Wageningen University & Research. It is open to all WUR research groups, and to other organisations and companies running collaborative projects with WUR.

You reach the cluster over SSH at login.anunna.wur.nl, or through your browser at the Apps Portal (https://apps.anunna.wur.nl/).

Documentation

Start here

  • About — what Anunna is, how it is built and run, and the policies that apply
  • Get Started — eligibility, getting an account, and logging in
  • Glossary of Terms — common HPC and Anunna terms explained

Using the cluster

  • System Access — login and compute nodes, filesystems, data transfer
  • Scheduling — submitting and managing jobs with SLURM
  • Software — modules, languages, containers, and licensed software
  • Storage — the storage tiers and how data is kept and protected
  • Apps Portal — graphical applications and desktops in your browser
  • Workflows — reproducible, efficient research workflows

Help and more

  • Training — courses, tutorials, and reference material
  • Support — getting help, reporting problems, and cluster status
  • For PIs — projects, allocations, and group management for group leaders
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