Allpathslg 48961: Difference between revisions
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/cm/shared/modulefiles/SHARED/ | /cm/shared/modulefiles/SHARED/ | ||
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#%Module1.0####################################################################### | #%Module1.0####################################################################### | ||
## maker ALLPATHS-LG (48961 modulefile | ## maker ALLPATHS-LG (48961 modulefile | ||
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module load gcc/4.8.1 | module load gcc/4.8.1 | ||
set allpathslg_48961_root /cm/shared/apps/SHARED/ALLPATHS-LG/allpathslg-48961/program/ | set allpathslg_48961_root /cm/shared/apps/SHARED/ALLPATHS-LG/allpathslg-48961/program/bin/ | ||
prepend-path PATH $allpathslg_48961_root | prepend-path PATH $allpathslg_48961_root | ||
</ | </pre> | ||
== Installation details == | == Installation details == | ||
Latest revision as of 14:41, 15 June 2023
ALLPATHS-LG is a popular genome assembler.
Module file
The module file can be found in this location:
/cm/shared/modulefiles/SHARED/
#%Module1.0#######################################################################
## maker ALLPATHS-LG (48961 modulefile
##
proc ModulesHelp { } {
puts stderr "\tAdds ALLPATHS-LG (48961) to your environment"
}
module-whatis "Adds ALLPATHS-LG (48961) to your environment"
module load gcc/4.8.1
set allpathslg_48961_root /cm/shared/apps/SHARED/ALLPATHS-LG/allpathslg-48961/program/bin/
prepend-path PATH $allpathslg_48961_root
Installation details
ALLPATHS-LG was compiled from source (using gcc4.8) on 15-03-2014: Source was downloaded by choosing the 'latests' link from here: http://www.broadinstitute.org/software/allpaths-lg/blog/?page_id=12