Soapdenovo2 r240: Difference between revisions
Jump to navigation
Jump to search
(Created page with " '''[http://en.wikipedia.org/wiki/BLAT_(bioinformatics) BLAT]''' (BLAST-like alignment tool) is a pairwise sequence alignment algorithm that was developed by Jim Kent at the U...") |
|||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
'''[http:// | '''[http://soap.genomics.org.cn/soapdenovo.html#intro2 SOAPdenovo2]''' is a popular genome assembler. | ||
| Line 26: | Line 26: | ||
== Installation details == | == Installation details == | ||
The | The pre-compiled binaries were downloaded from SourceForge on 15-03-2014: | ||
http://sourceforge.net/projects/soapdenovo2/files/SOAPdenovo2/ | |||
This included the GapCloser software (v1.12), ErrorCorrection (v0.04), and SOAPec (v2.01, includes Corrector_AR, Corrector_HA, KmerFreq_AR and KmerFreq_HA binaries). | |||
== See also == | == See also == | ||
| Line 36: | Line 35: | ||
== External links == | == External links == | ||
* [http:// | * [http://soap.genomics.org.cn/soapdenovo.html#intro2 SOAPdenovo2 home page] | ||
* [http:// | * [http://sourceforge.net/projects/soapdenovo2/files/SOAPdenovo2/ SourceForge link for SOAPdenovo2] | ||
* [http://sourceforge.net/projects/soapdenovo2/files/GapCloser/ SourceForge link for GapCloser] | |||
~ | ~ | ||
Latest revision as of 14:07, 15 March 2014
SOAPdenovo2 is a popular genome assembler.
Module file
The module file can be found in this location:
/cm/shared/modulefiles/SHARED/
<source lang='tcl'>#%Module1.0#######################################################################
- SOAPdenovo2 r240 modulefile
proc ModulesHelp { } {
puts stderr "\tAdds SOAPdenovo2 r240 to your environment"
}
module-whatis "Adds SOAPdenovo2 r240 to your environment"
set soapdenovo2_r240_root /cm/shared/apps/SHARED/SOAPdenovo2/SOAPdenovo2-bin-LINUX-generic-r240/
prepend-path PATH $soapdenovo2_r240_root
</source>
Installation details
The pre-compiled binaries were downloaded from SourceForge on 15-03-2014:
http://sourceforge.net/projects/soapdenovo2/files/SOAPdenovo2/
This included the GapCloser software (v1.12), ErrorCorrection (v0.04), and SOAPec (v2.01, includes Corrector_AR, Corrector_HA, KmerFreq_AR and KmerFreq_HA binaries).
See also
External links
~