Installing R packages locally: Difference between revisions

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== Specifying a local library search location ==
Specify a local library search location.
You can use several library trees of add-on packages. The easiest way to tell R to use these via a 'dotfile' by creating the following file '$HOME/.Renviron' (watch the quotes and ~ character):
<source lang='bash'>
  R_LIBS_USER="~/R/library"
</source>
This specifies a keyword (<code>R_LIBS_USER</code>) which points to a colon-separated list of directories at which R library trees are rooted. You do not have to specify the default tree for R packages.
If necessary, create a place for your R libraries
<source lang='bash'>
  mkdir ~/R ~/R/library        # Only need do this once
</source>
Set your R library path
<source lang='bash'>
  echo 'R_LIBS_USER="~/R/library"' >  $HOME/.Renviron
</source>
== Installing to a local library search location ==
Installation is dead easy. Start up R and tell R to fetch your package from CRAN, compile whatever needs compiling and set everything else up.
Beware - each package will only work for the platform (i.e. Linux or Solaris) where you installed it. If you want a package on both Linux and Solaris, you'll need to install it in different directories for each system type.
<source lang='bash'>
  R                    # Invoke R
<source lang='bash'>
  > install.packages("name-of-your-package",lib="~/R/library")
</source>
<source lang='bash'>
<source lang='bash'>
R_LIBS_USER="~/R/library"
R_LIBS_USER="~/R/library"

Revision as of 21:21, 26 November 2013


Specifying a local library search location

Specify a local library search location.

You can use several library trees of add-on packages. The easiest way to tell R to use these via a 'dotfile' by creating the following file '$HOME/.Renviron' (watch the quotes and ~ character): <source lang='bash'>

 R_LIBS_USER="~/R/library"

</source> This specifies a keyword (R_LIBS_USER) which points to a colon-separated list of directories at which R library trees are rooted. You do not have to specify the default tree for R packages.

If necessary, create a place for your R libraries <source lang='bash'>

 mkdir ~/R ~/R/library         # Only need do this once

</source> Set your R library path <source lang='bash'>

 echo 'R_LIBS_USER="~/R/library"' >  $HOME/.Renviron

</source>

Installing to a local library search location

Installation is dead easy. Start up R and tell R to fetch your package from CRAN, compile whatever needs compiling and set everything else up.

Beware - each package will only work for the platform (i.e. Linux or Solaris) where you installed it. If you want a package on both Linux and Solaris, you'll need to install it in different directories for each system type.

<source lang='bash'>

 R                     # Invoke R

<source lang='bash'>

 > install.packages("name-of-your-package",lib="~/R/library")

</source> <source lang='bash'> R_LIBS_USER="~/R/library" </source>

See also

External links

source for material for this aricle