Bioinformatics protocols ABG Chairgroup: Difference between revisions
Jump to navigation
Jump to search
No edit summary |
No edit summary |
||
| (3 intermediate revisions by one other user not shown) | |||
| Line 10: | Line 10: | ||
* [[ssh_without_password | ssh without password]] | * [[ssh_without_password | ssh without password]] | ||
* [[Create_shortcut_log-in_command | Create a shortcut for the ssh log-in command]] | * [[Create_shortcut_log-in_command | Create a shortcut for the ssh log-in command]] | ||
* [[Installing_R_packages_locally | Installing R packages locally]] | |||
* [[ABGSA | Animal Breeding and Genomics Sequence Archives (ABGSA)]] | |||
* [[ | * [[Short_read_mapping_pipeline_pig | Short read mapping pipeline for the pig project]] | ||
* [[ | * [[1000Bulls_mapping_pipeline_at_ABGC | 1000 Bulls mapping pipeline at ABGC]] | ||
Latest revision as of 14:49, 19 March 2019
This page is intended as a portal to pages concerning best practices, workflows and pipelines, and other protocols (including scripts).
A list of tutorials, workflows, and recipes
- Mapping Illumina GA2/HiSeq reads to the Sus scrofa genome assembly
- A Perl script to convert fastq to fasta file format
- Setup Printers on Ubuntu Machines
- Mapping Pair-end reads with Stampy
- Create slices from a collection of BAM files
- Setting up and using a virtual environment for Python3
- ssh without password
- Create a shortcut for the ssh log-in command
- Installing R packages locally
- Animal Breeding and Genomics Sequence Archives (ABGSA)
- Short read mapping pipeline for the pig project
- 1000 Bulls mapping pipeline at ABGC