Bioinformatics protocols ABG Chairgroup: Difference between revisions
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This page is intended as a portal to pages concerning best practices, workflows and pipelines, and other protocols (including scripts). | This page is intended as a portal to pages concerning best practices, workflows and pipelines, and other protocols (including scripts). | ||
== A list of tutorials, workflows, and recipes == | |||
* [[Mapping_reads_with_Mosaik | Mapping Illumina GA2/HiSeq reads to the Sus scrofa genome assembly]] | * [[Mapping_reads_with_Mosaik | Mapping Illumina GA2/HiSeq reads to the Sus scrofa genome assembly]] | ||
* [[convert_fastq_to_fasta | A Perl script to | * [[convert_fastq_to_fasta | A Perl script to convert fastq to fasta file format]] | ||
* [[Setup Printers on Ubuntu Machines]] | * [[Setup Printers on Ubuntu Machines]] | ||
* [[Mapping Pair-end reads with Stampy]] | * [[Mapping Pair-end reads with Stampy]] | ||
* [[making_slices_from_BAM_files | Create slices from a collection of BAM files ]] | * [[making_slices_from_BAM_files | Create slices from a collection of BAM files ]] | ||
* [[Setting_up_Python_virtualenv | Setting up and using a virtual environment for Python3 ]] | |||
* [[ssh_without_password | ssh without password]] | |||
* [[Create_shortcut_log-in_command | Create a shortcut for the ssh log-in command]] | |||
* [[Installing_R_packages_locally | Installing R packages locally]] | |||
* [[ABGSA | Animal Breeding and Genomics Sequence Archives (ABGSA)]] | |||
* [[Short_read_mapping_pipeline_pig | Short read mapping pipeline for the pig project]] | |||
* [[1000Bulls_mapping_pipeline_at_ABGC | 1000 Bulls mapping pipeline at ABGC]] | |||
Latest revision as of 14:49, 19 March 2019
This page is intended as a portal to pages concerning best practices, workflows and pipelines, and other protocols (including scripts).
A list of tutorials, workflows, and recipes
- Mapping Illumina GA2/HiSeq reads to the Sus scrofa genome assembly
- A Perl script to convert fastq to fasta file format
- Setup Printers on Ubuntu Machines
- Mapping Pair-end reads with Stampy
- Create slices from a collection of BAM files
- Setting up and using a virtual environment for Python3
- ssh without password
- Create a shortcut for the ssh log-in command
- Installing R packages locally
- Animal Breeding and Genomics Sequence Archives (ABGSA)
- Short read mapping pipeline for the pig project
- 1000 Bulls mapping pipeline at ABGC