Soapdenovo2 r240: Difference between revisions
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The pre-compiled binaries were downloaded from SourceForge on 15-03-2014: | The pre-compiled binaries were downloaded from SourceForge on 15-03-2014: | ||
http://sourceforge.net/projects/soapdenovo2/files/SOAPdenovo2/ | http://sourceforge.net/projects/soapdenovo2/files/SOAPdenovo2/ | ||
This included the GapCloser software (v1.12) | This included the GapCloser software (v1.12), ErrorCorrection (v0.04), and SOAPec (v2.01, includes Corrector_AR, Corrector_HA, KmerFreq_AR and KmerFreq_HA binaries). | ||
== See also == | == See also == | ||
Latest revision as of 14:07, 15 March 2014
SOAPdenovo2 is a popular genome assembler.
Module file
The module file can be found in this location:
/cm/shared/modulefiles/SHARED/
<source lang='tcl'>#%Module1.0#######################################################################
- SOAPdenovo2 r240 modulefile
proc ModulesHelp { } {
puts stderr "\tAdds SOAPdenovo2 r240 to your environment"
}
module-whatis "Adds SOAPdenovo2 r240 to your environment"
set soapdenovo2_r240_root /cm/shared/apps/SHARED/SOAPdenovo2/SOAPdenovo2-bin-LINUX-generic-r240/
prepend-path PATH $soapdenovo2_r240_root
</source>
Installation details
The pre-compiled binaries were downloaded from SourceForge on 15-03-2014:
http://sourceforge.net/projects/soapdenovo2/files/SOAPdenovo2/
This included the GapCloser software (v1.12), ErrorCorrection (v0.04), and SOAPec (v2.01, includes Corrector_AR, Corrector_HA, KmerFreq_AR and KmerFreq_HA binaries).
See also
External links
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