User contributions for Derks047
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25 November 2019
7 March 2017
- 16:1916:19, 7 March 2017 diff hist −1 JBrowse →Wiggle/BigWig tracks (WIG)
- 16:1916:19, 7 March 2017 diff hist −959 JBrowse →Wiggle/BigWig tracks (WIG)
23 February 2016
- 16:2816:28, 23 February 2016 diff hist 0 JBrowse No edit summary
- 16:1716:17, 23 February 2016 diff hist +45 JBrowse →Alignment tracks (BAM)
- 16:1216:12, 23 February 2016 diff hist −360 JBrowse →Wiggle/BigWig tracks (WIG)
- 16:1116:11, 23 February 2016 diff hist +1,454 JBrowse →Wiggle/BigWig tracks (WIG)
- 14:5014:50, 23 February 2016 diff hist +31 JBrowse →Evidence tracks
- 14:5014:50, 23 February 2016 diff hist +3 JBrowse →Evidence tracks
- 14:5014:50, 23 February 2016 diff hist +114 JBrowse →Evidence tracks
- 14:4914:49, 23 February 2016 diff hist +83 JBrowse →Variant tracks (VCF)
- 14:4814:48, 23 February 2016 diff hist +451 JBrowse →Variant tracks (VCF)
- 14:4514:45, 23 February 2016 diff hist +11 JBrowse →Alignment tracks (BAM)
- 14:4514:45, 23 February 2016 diff hist +172 JBrowse →Alignment tracks (BAM)
- 14:4314:43, 23 February 2016 diff hist +1,307 JBrowse →Alignment tracks (BAM)
- 14:3914:39, 23 February 2016 diff hist +133 JBrowse →Alignment tracks (BAM)
10 February 2016
- 11:1211:12, 10 February 2016 diff hist +31 Assembly & Annotation →Submission current
28 January 2016
- 16:2916:29, 28 January 2016 diff hist −1 JBrowse No edit summary
- 16:2916:29, 28 January 2016 diff hist −4 JBrowse No edit summary
- 16:2916:29, 28 January 2016 diff hist +123 JBrowse No edit summary
- 15:4215:42, 28 January 2016 diff hist +421 JBrowse →Add annotation files (GFF/BED)
- 15:4115:41, 28 January 2016 diff hist +31 JBrowse →Add annotation files (GFF/BED)
- 15:4015:40, 28 January 2016 diff hist +218 JBrowse →Add annotation files (GFF/BED)
- 15:2615:26, 28 January 2016 diff hist +121 JBrowse →Add reference sequence
- 14:5814:58, 28 January 2016 diff hist +99 JBrowse →Add annotation files (GFF/BED)
27 January 2016
- 15:3615:36, 27 January 2016 diff hist −9 JBrowse →Trim sequences for quality and adapters
- 15:3515:35, 27 January 2016 diff hist +64 JBrowse →Add reference sequence
- 15:3515:35, 27 January 2016 diff hist +150 JBrowse →Add reference sequence
- 09:5509:55, 27 January 2016 diff hist +173 JBrowse →Typical commands used to set up a JBrowse
- 09:5009:50, 27 January 2016 diff hist −4 JBrowse →Typical commands used to set up a JBrowse
- 09:5009:50, 27 January 2016 diff hist +4 JBrowse →Typical commands used to set up a JBrowse
- 09:4809:48, 27 January 2016 diff hist +3 JBrowse →Typical commands used to set up a JBrowse
- 09:4809:48, 27 January 2016 diff hist +498 N JBrowse Created page with "=== Typical commands used to set up a JBrowse === Author: Martijn Derks * JBrowse is available for multiple species: - https://jbrowse.hpcagrogenomics.wur.nl/pig/ - https:/..."
- 09:4409:44, 27 January 2016 diff hist +8 DE expression No edit summary current
- 09:4409:44, 27 January 2016 diff hist +15 DE expression No edit summary
- 09:4309:43, 27 January 2016 diff hist +24 Bioinformatics tips tricks workflows →A list of tutorials, workflows, and recipes
26 January 2016
- 13:5913:59, 26 January 2016 diff hist −96 DE expression →Remove PCR duplicates and use stringtie to quantify/assemble transcripts
- 13:5413:54, 26 January 2016 diff hist 0 DE expression →Merge transcriptomes
- 13:5413:54, 26 January 2016 diff hist +21 DE expression →Differential expression with Cuffdiff
- 13:5313:53, 26 January 2016 diff hist +3,441 N DE expression Created page with "=== Typical commands used for doing a DE expression study using Tophat (including Bowtie2 as aligner), Stringtie and Cuffdiff === * Samtools, Trimmomatic, Tophat, Bowtie2, S..."
- 13:4413:44, 26 January 2016 diff hist +2 Bioinformatics tips tricks workflows →A list of tutorials, workflows, and recipes
- 13:4313:43, 26 January 2016 diff hist +67 Bioinformatics tips tricks workflows →A list of tutorials, workflows, and recipes
25 January 2016
- 10:1110:11, 25 January 2016 diff hist 0 Assembly & Annotation →Protocol with typical commands used for de novo assembly and annotation
- 10:1110:11, 25 January 2016 diff hist +30 Assembly & Annotation →Protocol with typical commands used for de novo assembly and annotation
21 January 2016
- 14:2214:22, 21 January 2016 diff hist +4 Assembly & Annotation →Protocol with typical commands used for de novo assembly and annotation
- 14:2114:21, 21 January 2016 diff hist +4 Assembly & Annotation →Protocol with typical commands used for de novo assembly and annotation
- 14:2114:21, 21 January 2016 diff hist −5 Assembly & Annotation →Protocol with typical commands used for de novo assembly and annotation
- 14:2114:21, 21 January 2016 diff hist +69 Assembly & Annotation →Protocol with typical commands used for de novo assembly and annotation (Author: Martijn Derks)
- 14:2014:20, 21 January 2016 diff hist +24 Assembly & Annotation No edit summary
- 14:1914:19, 21 January 2016 diff hist +33 Assembly & Annotation →Software