Maker 2.2.8

From HPCwiki
Revision as of 22:12, 20 December 2013 by Megen002 (talk | contribs)
Jump to navigation Jump to search

Maker is a gene prediction/annotation pipeline.

Module file

The module file can be found in this location:

 /cm/shared/apps/WUR/ABGC/modulefiles
#%Module1.0#######################################################################
## maker 2.28 modulefile
##
proc ModulesHelp { } {

        puts stderr "\tAdds maker 2.28 to your environment"
}

module-whatis   "Adds maker 2.28 to your environment"

module load BLAST+/2.2.28 RepeatMasker/4.0.3 exonerate/2.2.0-x86_64 snap/2013-11-29 augustus/2.7

set             maker_228_root        /cm/shared/apps/WUR/ABGC/maker/maker-2.28/src/bin

prepend-path     PATH             $maker_228_root
set             maker_228_perllib     /cm/shared/apps/WUR/ABGC/maker/maker-2.28/perl/lib:/cm/shared/apps/WUR/ABGC/maker/maker-2.28/lib

prepend-path     PERL5LIB         $maker_228_perllib

See also

External links