Snap

SNAP is a general purpose gene finding program suitable for both eukaryotic and prokaryotic genomes. SNAP is an acroynm for Semi-HMM-based Nucleic Acid Parser.

Module file

The module file can be found in this location:

 /cm/shared/modulefiles/SHARED/

#%Module1.0#######################################################################
## snap 2013-11-29 modulefile
##
proc ModulesHelp { } {

        puts stderr "\tAdds snap 2013-11-29 to your environment"
}

module-whatis   "Adds snap 2013-11-29 to your environment"


setenv ZOE /cm/shared/apps/SHARED/snap/snap-2013-11-29/Zoe

set             snap_20131129_root        /cm/shared/apps/SHARED/snap/snap-2013-11-29

prepend-path     PATH             $snap_20131129_root

Installation details

Compiled from source using gcc 4.8.

Further details

The package includes a bunch of pre-made hmm profiles:

 /cm/shared/apps/SHARED/snap/snap-2013-11-29/HMM/

See also

• Globally installed software
• ABGC specific modules

External links

• Korf Lab software page