Hmmer 3.1

HMMER is used for searching sequence databases for homologs of protein sequences, and for making protein sequence alignments. It implements methods using probabilistic models called profile hidden Markov models (profile HMMs).

Module file

The module file can be found in this location:

 /cm/shared/modulefiles/SHARED/

<source lang='tcl'>

1. %Module1.0#######################################################################
   1. hmmer 3.1 modulefile

proc ModulesHelp { } {

       puts stderr "\tAdds hmmer v3.1 to your environment"

}

module-whatis "Adds hmmer v3.1 to your environment"

set hmmer_31_root /cm/shared/apps/SHARED/hmmer/hmmer-3.1b1-linux-intel-x86_64/binaries/

prepend-path PATH $hmmer_31_root </source>

Installation details

Downloaded as pre-compiled binaries from the hmmer website.

See also

• Globally installed software
• ABGC specific modules

External links

• hmmer website