Augustus 2.7

"AUGUSTUS is a gene prediction program for eukaryotes genomic sequences. It can be used as an ab initio program, which means it bases its prediction purely on the sequence. AUGUSTUS may also incorporate hints on the gene structure coming from extrinsic sources such as EST, MS/MS, protein alignments and synthenic genomic alignments."

Module file

The module file can be found in this location:

 /cm/shared/modulefiles/SHARED/

<source lang='tcl'>

1. %Module1.0#######################################################################
   1. augustus 2.7 modulefile

proc ModulesHelp { } {

       puts stderr "\tAdds augustus 2.7 to your environment"

}

module-whatis "Adds augustus 2.7 to your environment"

setenv AUGUSTUS_CONFIG_PATH /cm/shared/apps/SHARED/augustus/augustus.2.7/config

set augustus_27_root /cm/shared/apps/SHARED/augustus/augustus.2.7/src

prepend-path PATH $augustus_27_root

</source>

See also

• Globally installed software
• ABGC specific modules

External links

• Augustus homepage