Samtools v0.1.12a

BWA is a short read aligner designed by Heng Li and currently the most widely used aligner for re-sequencing analysis.

Module file

The module file can be found in this location:

 /cm/shared/apps/WUR/ABGC/modulefiles

<source lang='tcl'>

1. %Module1.0#######################################################################
   1. samtools 0.1.12a modulefile

proc ModulesHelp { } {

       puts stderr "\tAdds samtools v0.1.12a to your environment"

}

module-whatis "Adds samtools v0.1.12a to your environment"

set samtools_v112a_root /cm/shared/apps/WUR/ABGC/samtools/samtools-0.1.12a:/cm/shared/apps/WUR/ABGC/samtools/samtools-0.1.12a/bcftools:/cm/shared/apps/WUR/ABGC/samtools/samtools-0.1.12a/misc

setenv SAMTOOLS_V112a /cm/shared/apps/WUR/ABGC/samtools/samtools-0.1.12a prepend-path PATH $samtools_v112a_root

</source>

See also

• Globally installed software
• ABGC specific modules

External links

• BWA manpage