RepeatModeler 1.0.7
RepeatModeler is a de-novo repeat family identification and modeling package. At the heart of RepeatModeler are two de-novo repeat finding programs ( RECON and RepeatScout ) which employ complementary computational methods for identifying repeat element boundaries and family relationships from sequence data. RepeatModeler assists in automating the runs of RECON and RepeatScout given a genomic database and uses the output to build, refine and classify consensus models of putative interspersed repeats.
Module file
The module file can be found in this location:
/cm/shared/apps/WUR/ABGC/modulefiles
#%Module1.0#######################################################################
## RepeatModeler 1.0.7 modulefile
##
proc ModulesHelp { } {
puts stderr "\tAdds RepeatModeler v1.0.7 to your environment"
}
module-whatis "Adds RepeatModeler v1.0.7 to your environment"
set repeatmodeler_107_root /cm/shared/apps/WUR/ABGC/RepeatModeler/RepeatModeler-1-0-7/
prepend-path PATH $repeatmodeler_107_root