Maker 2.2.8

Maker is a gene prediction/annotation pipeline.

Module file

The module file can be found in this location:

 /cm/shared/apps/WUR/ABGC/modulefiles

<source lang='tcl'>

1. %Module1.0#######################################################################
   1. maker 2.28 modulefile

proc ModulesHelp { } {

       puts stderr "\tAdds maker 2.28 to your environment"

}

module-whatis "Adds maker 2.28 to your environment"

module load BLAST+/2.2.28 RepeatMasker/4.0.3 exonerate/2.2.0-x86_64 snap/2013-11-29 augustus/2.7

set maker_228_root /cm/shared/apps/WUR/ABGC/maker/maker-2.28/src/bin setenv TMPDIR /local

prepend-path PATH $maker_228_root set maker_228_perllib /cm/shared/apps/WUR/ABGC/maker/maker-2.28/perl/lib:/cm/shared/apps/WUR/ABGC/maker/maker-2.28/lib

prepend-path PERL5LIB $maker_228_perllib

</source> Please note that Maker requires the system tempdir to be in a non-NFS location. To be safe, best to put it in a local disc. For that reason the TMPDIR environment variable gets set to /local. Also note that Maker requires an Sqlite database. Sqlite databases are (currently) not compatible with the Lustre file system.

External links

• Maker homepage
• Maker tutorial