RAxML8.0.0
RAxML (Randomized Axelerated Maximum Likelihood) is a program for sequential and parallel Maximum Likelihood based inference of large phylogenetic trees. It can also be used for postanalyses of sets of phylogenetic trees, analyses of alignments and, evolutionary placement of short reads.
Module file
The module file can be found in this location:
/cm/shared/modulefiles/SHARED/
<source lang='tcl'>
- %Module1.0#######################################################################
- RAxML 8.0.0 modulefile
proc ModulesHelp { } {
puts stderr "\tAdds RAxML8.0.0 to your environment"
}
module-whatis "Adds RAxML8.0.0 to your environment"
set raxml800_root /cm/shared/apps/SHARED/RAxML/RAxML8.0.0
prepend-path PATH $raxml800_root
</source>
Installation details
Compiled from source using the stock gcc 4.4 of Scientific Linux on 15-03-2014:
https://github.com/stamatak/standard-RAxML
<source lang="bash">
make -f Makefile.SSE3.gcc
make -f Makefile.SSE3.PTHREADS.gcc
make -f Makefile.SSE3.MPI.gcc
</source>
The file Makefile.SSE3.MPI.gcc has been modified:
CC = mpicc
The version of openmpi used:
openmpi/gcc/64/1.6.5
Note that the MPI version has not been tested - issues may remain.