JBrowse

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Typical commands used to set up a JBrowse

Author: Martijn Derks

JBrowse is available for multiple species:

- https://jbrowse.hpcagrogenomics.wur.nl/pig/ - https://jbrowse.hpcagrogenomics.wur.nl/chicken/ - https://jbrowse.hpcagrogenomics.wur.nl/cattle/ - https://jbrowse.hpcagrogenomics.wur.nl/turkey/

Users are free to add usefull commands to this tutorial
Use case in wintermoth. 12 samples (1 Egg, 1 Caterpillar, 3x3 Pupa, 1 Moth).

Trim sequences for quality and adapters

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