MAFFT 7.130

MAFFT is a multiple sequence alignment program for unix-like operating systems. It offers a range of multiple alignment methods, L-INS-i (accurate; for alignment of <∼200 sequences), FFT-NS-2 (fast; for alignment of <∼10,000 sequences), etc.

Module file

The module file can be found in this location:

 /cm/shared/modulefiles/SHARED/

<source lang='tcl'>

1. %Module1.0#######################################################################
   1. MAFFT 7.130 modulefile

proc ModulesHelp { } {

       puts stderr "\tAdds MAFFT 7.130 to your environment"

}

module-whatis "Adds MAFFT 7.130 to your environment"

setenv MAFFT_BINARIES /cm/shared/apps/SHARED/MAFFT/mafft-7.130-with-extensions/binaries

set mafft_7_root /cm/shared/apps/SHARED/MAFFT/mafft-7.130-with-extensions/bin

prepend-path PATH $mafft_7_root

</source>

Installation details

Downloaded as pre-compiled binary:

  http://www.drive5.com/muscle/downloads3.8.31/muscle3.8.31_i86linux64.tar.gz

See also

• Globally installed software
• ABGC specific modules

External links

• MUSCLE home page