Snap

SNAP is a general purpose gene finding program suitable for both eukaryotic and prokaryotic genomes. SNAP is an acroynm for Semi-HMM-based Nucleic Acid Parser.

Module file

The module file can be found in this location:

 /cm/shared/apps/WUR/ABGC/modulefiles

<source lang='tcl'>

1. %Module1.0#######################################################################
   1. snap 2013-11-29 modulefile

proc ModulesHelp { } {

       puts stderr "\tAdds snap 2013-11-29 to your environment"

}

module-whatis "Adds snap 2013-11-29 to your environment"

setenv ZOE /cm/shared/apps/WUR/ABGC/snap/snap-2013-11-29/Zoe

set snap_20131129_root /cm/shared/apps/WUR/ABGC/snap/snap-2013-11-29

prepend-path PATH $snap_20131129_root

</source>

Installation details

Compiled from source using gcc 4.8.

Further details

The package includes a bunch of pre-made hmm profiles:

 /cm/shared/apps/WUR/ABGC/snap/snap-2013-11-29/HMM/

See also

• Globally installed software
• ABGC specific modules

External links

• Korf Lab software page