Muscle 3.8.31

MUSCLE is one of the best-performing multiple alignment programs according to published benchmark tests, with accuracy and speed that are consistently better than CLUSTALW. MUSCLE can align hundreds of sequences in seconds. Most users learn everything they need to know about MUSCLE in a few minutes—only a handful of command-line options are needed to perform common alignment tasks.

Module file

The module file can be found in this location:

 /cm/shared/modulefiles/SHARED/

<source lang='tcl'>

1. %Module1.0#######################################################################
   1. Muscle 3.8.31 modulefile

proc ModulesHelp { } {

       puts stderr "\tAdds Muscle 3.8.31 to your environment"

}

module-whatis "Adds Muscle 3.8.31 to your environment"

set muscle3_8_root /cm/shared/apps/SHARED/Muscle/muscle3.8.31/ prepend-path PATH $muscle3_8_root </source>

Installation details

Downloaded as pre-compiled binary:

  http://www.drive5.com/muscle/downloads3.8.31/muscle3.8.31_i86linux64.tar.gz

See also

• Globally installed software
• ABGC specific modules

External links

• MUSCLE home page