Main public logs

Combined display of all available logs of HPCwiki. You can narrow down the view by selecting a log type, the username (case-sensitive), or the affected page (also case-sensitive).

14:23, 16 June 2026 Haars0011 talk contribs moved page Matlab to Licensed Software/MATLAB (Phase 1 § 5 P1.5.8: move MATLAB under Licensed Software as a sub-page (via move-page on MediaWiki MCP Server))
14:23, 16 June 2026 Haars0011 talk contribs created page Licensed Software (Phase 1 § 5 P1.5.8 / Phase 2 P2.12: hub page for licensed software, linking to per-package pages (MATLAB subpage, CLC) (via create-page on MediaWiki MCP Server))
13:48, 16 June 2026 Honfi001 talk contribs created page HPC Advanced/Preparation Exercise (Created page with "= HPC Basics Refresher — Weather Data Analyser = {{Note|'''Who is this for?''' This is a self-paced preparation exercise for people who are attending the '''HPC Advanced''' course but did '''not''' attend '''HPC Basics'''. Working through it end to end means you arrive at the advanced course already comfortable with environment variables, virtual environments, launcher scripts, interactive jobs, and SLURM batch submission on '''Anunna'''.}} '''The application:''' a s...")
13:42, 16 June 2026 Haars0011 talk contribs moved page Requesting new software to Requesting New Software (Phase 1 § 5 P1.5.9: rename to match menu leaf casing (Requesting New Software), consistent with other § 5 / § 4 page titles (via move-page on MediaWiki MCP Server))
13:34, 16 June 2026 Haars0011 talk contribs created page Installing Personal Software (Phase 1 § 5 P1.5.3 / Phase 2 P2.10: new hub merging Old binaries + Setting TMPDIR + Setting local variables + completed Aliases DRAFT. Canonical $myScratch/$myBackup/$myNobackup variable convention. (via create-page on MediaWiki MCP Server))
09:56, 16 June 2026 Haars0011 talk contribs moved page Array jobs to Array Jobs (Phase 1 § 4 cosmetic: rename Array jobs → Array Jobs for casing consistency with sibling pages (Batch Jobs, Interactive Jobs, Cancelling Jobs, Monitoring Jobs) (via move-page on MediaWiki MCP Server))
09:55, 16 June 2026 Haars0011 talk contribs created page Fair Use Policy (Phase 2 P2.8: create stub for Fair Use Policy — placeholder pending full policy text (via create-page on MediaWiki MCP Server))
09:48, 16 June 2026 Haars0011 talk contribs moved page Talk:Using Slurm to Talk:Scheduler Overview (Slurm) (Phase 1 § 4 P1.4.1: rename Using Slurm → Scheduler Overview (Slurm) as part of the § 4 refactor (via move-page on MediaWiki MCP Server))
09:48, 16 June 2026 Haars0011 talk contribs moved page Using Slurm to Scheduler Overview (Slurm) (Phase 1 § 4 P1.4.1: rename Using Slurm → Scheduler Overview (Slurm) as part of the § 4 refactor (via move-page on MediaWiki MCP Server))
09:41, 16 June 2026 Haars0011 talk contribs created page Monitoring Jobs (Phase 1 § 4 P1.4.7: merge Using Slurm § Monitoring + Monitoring job execution + SACCT + Node usage graph into Monitoring Jobs (via create-page on MediaWiki MCP Server))
09:28, 16 June 2026 Haars0011 talk contribs created page Batch Jobs (Phase 1 § 4 P1.4.4: merge Creating sbatch script + Using Slurm § Submitting into Batch Jobs (via create-page on MediaWiki MCP Server))
09:19, 16 June 2026 Haars0011 talk contribs created page Interactive Jobs (Phase 1 § 4 P1.4.5: split Interactive Jobs out of Using Slurm § sinteractive + § salloc (via create-page on MediaWiki MCP Server))
09:06, 16 June 2026 Haars0011 talk contribs created page Cancelling Jobs (Phase 1 § 4 P1.4.8: split Cancelling Jobs out of Using Slurm § scancel (via create-page on MediaWiki MCP Server))
09:06, 16 June 2026 Haars0011 talk contribs created page Choosing a node (constraints) (Phase 1 § 4 P1.4.3: split Choosing a node (constraints) out of Using Slurm § Defaults + § Using GPU (via create-page on MediaWiki MCP Server))
09:06, 16 June 2026 Haars0011 talk contribs created page Partitions / Queues (Phase 1 § 4 P1.4.2: split Partitions / Queues out of Using Slurm § Queues (via create-page on MediaWiki MCP Server))
14:21, 15 June 2026 Haars0011 talk contribs deleted page Submit job with qsub (content was: "a protocol for submitting using 'qsub'", and the only contributor was "Hjmegens" (talk))
14:20, 15 June 2026 Haars0011 talk contribs deleted page Obfuscating runs (content was: "<source lang='bash'> #!/bin/bash #SBATCH --exclusive #SBATCH --nodes=1 #SBATCH --mem=10000 #SBATCH --comment="cv testjob" #SBATCH -p student RND=`< /dev/urandom tr -dc _A-Z-a-z-0-9 | head -c${1:-32};echo;` ln -s `which sleep` $RND echo "Using $RND as binary name" ./$RND 10 </source>", and the only contributor was "Megen002" (talk))
14:20, 15 June 2026 Haars0011 talk contribs deleted page Events (content was: "This page contains a list of events of potential interest to the ABGC community. {| class="wikitable" |- ! What? ! When? ! Where? ! Description ! remarks |- | Illumina Sequencing Seminar | Wednesday, December 7, 2011 | Radix Building (Wageningen Campus), room W0.1 | | |- | etc | etc | etc | etc | |- | etc | etc | etc | etc | |}", and the only contributor was "Hjmegens" (talk))
14:20, 15 June 2026 Haars0011 talk contribs deleted page List of users (content was: " == Active users == List of users. Alphabetical order (last/family name). Provide some background information by adding information to the 'User:username' page. * Wes Barris (Cobb) * John Bastiaansen (WUR/ABGC) * Rianne van Binsbergen (WUR/ABGC) * Mirte Bosse (WUR/ABGC) * Aniek Bouwman (WUR/ABGC) * Pim Brascamp (WUR/ABGC) * User:Calus001 | Mario Calus (WUR...")
14:19, 15 June 2026 Haars0011 talk contribs deleted page Cuda (content was: "CUDA® is a parallel computing platform and programming model invented by NVIDIA. It is a module designed to allow you to write code for NVIDIA graphics processing units (GPUs).", and the only contributor was "Dawes001" (talk))
14:19, 15 June 2026 Haars0011 talk contribs deleted page Anunna (content was: "Anunna is a new cluster derived from parts of the HPC AgroGenomics cluster as of January 2019, combined with new infrastructure.", and the only contributor was "Hjmegens" (talk))
14:18, 15 June 2026 Haars0011 talk contribs deleted page Manual GitLab (content was: "Manual GitLab@WUR: Create projects and add files == Signing up == If you haven't done so already, install git in your local machine and sign up at GitLab@WUR: https://git.wageningenur.nl == Example of local commands to execute == <source lang='bash'> ## This shows an example, step by step, to create a project and add files into that project. ## Configuration: # 1. Create a folder in your machine, e.g.: mkdir ~/Git_Stuff # 2. configuration step 1: git config --global us...")
07:56, 15 June 2026 User account Strei004 talk contribs was created automatically
09:17, 11 June 2026 Honfi001 talk contribs created page Linux Basic/Linux Self Assessment (Created page with "= Linux Basics — Self-Assessment = This page lets you verify that you have mastered the material from the Linux Basics Course. Work through the parts in order on '''Anunna'''. The final challenge produces a report file that proves you completed every step — submit (or keep) that file as evidence. '''Prerequisites:''' an Anunna account and the course data at <code>/lustre/shared/hpcCourses/shell-lesson-data.zip</code>. '''Rules:''' * Do everything from the comm...")
12:12, 9 June 2026 Haars0011 talk contribs deleted page Samtools (content was: "#REDIRECT Samtools v0.1.12a", and the only contributor was "Dawes001" (talk))
12:12, 9 June 2026 Haars0011 talk contribs deleted page Installed software (content was: "#REDIRECT Globally_installed_software", and the only contributor was "Dawes001" (talk))
12:11, 9 June 2026 Haars0011 talk contribs deleted page Downtime (content was: "#REDIRECT Maintenance_and_Management", and the only contributor was "Dawes001" (talk))
12:11, 9 June 2026 Haars0011 talk contribs deleted page Domain specific software on B4Fcluster installation by users (content was: "#REDIRECT Installation by users", and the only contributor was "Dawes001" (talk))
12:11, 9 June 2026 Haars0011 talk contribs deleted page Dmtcp (content was: "#REDIRECT Checkpointing", and the only contributor was "Dawes001" (talk))
12:11, 9 June 2026 Haars0011 talk contribs deleted page DMTCP (content was: "#REDIRECT Checkpointing", and the only contributor was "Dawes001" (talk))
12:11, 9 June 2026 Haars0011 talk contribs deleted page Checkpoint (content was: "#REDIRECT Checkpointing", and the only contributor was "Vande018" (talk))
12:11, 9 June 2026 Haars0011 talk contribs deleted page Agrogenomics Cluster (content was: "#REDIRECT B4F_cluster", and the only contributor was "Dawes001" (talk))
12:10, 9 June 2026 Haars0011 talk contribs deleted page Virtualenv (content was: "#REDIRECT Setting_up_Python_virtualenv", and the only contributor was "Dawes001" (talk))
12:10, 9 June 2026 Haars0011 talk contribs deleted page Trinity (content was: "#REDIRECT Trinity r20131110", and the only contributor was "Dawes001" (talk))
12:10, 9 June 2026 Haars0011 talk contribs deleted page Globally installed software (content was: "== Available as modules == * acml * alphaimpute * bamtools * bcftools * beagle * blacs * blas * BLAST+ * bonnie++ * boost * bowtie * canu * cdo * cmgui * cuda * diamond * dmtcp * emos * fasttree * ferret * ffmpeg * fftw2 * fftw3 * flex * freebayes * gcc * gcta * gdal * gdb * geos * glibc * glimmer * glimmerHMM * globalarrays * grads * grib * gsl * hadoop * hdf4 * hdf5 * hmmer * hpl * htslib *...")
12:10, 9 June 2026 Haars0011 talk contribs deleted page Software (content was: "#REDIRECT Globally installed software", and the only contributor was "Dawes001" (talk))
12:10, 9 June 2026 Haars0011 talk contribs deleted page SLURM on B4F cluster (content was: "#REDIRECT Using Slurm", and the only contributor was "Dawes001" (talk))
12:10, 9 June 2026 Haars0011 talk contribs deleted page RAxML (content was: "#REDIRECT RAxML8.0.0", and the only contributor was "Dawes001" (talk))
12:09, 9 June 2026 Haars0011 talk contribs deleted page Log in to B4F cluster (content was: "#REDIRECT Log in to Anunna", and the only contributor was "Dawes001" (talk))
12:09, 9 June 2026 Haars0011 talk contribs deleted page Lustre PFS layout (content was: "#REDIRECT Filesystems", and the only contributor was "Dawes001" (talk))
12:09, 9 June 2026 Haars0011 talk contribs deleted page BCM on B4F cluster (content was: "#REDIRECT BCM on Anunna", and the only contributor was "Dawes001" (talk))
12:09, 9 June 2026 Haars0011 talk contribs deleted page Installation by users (content was: "== Domain specific folders for executables and libraries == Many packages and applications can be installed locally in the $HOME directory. Users of each of the groups (e.g. 'WUR/ABGC') can deposit a map with executables or library files that can be of interest to multiple users /cm/shared/apps/WUR/ABGC/ == Preparing modules for local or domain specific use == Example of making a very simple module that would load a specific version of the short-read aligner bwa to your e...")
12:07, 9 June 2026 Haars0011 talk contribs deleted page Hmmer (content was: "#REDIRECT Hmmer_3.1", and the only contributor was "Dawes001" (talk))
12:07, 9 June 2026 Haars0011 talk contribs deleted page Whole genome alignment pipeline (content was: "Author: Carolina Pita Barros Contact: carolina.pitabarros@wur.nl ABG For up-to-date documentation see [https://github.com/CarolinaPB/whole-genome-alignment here] = Whole genome alignment pipeline = Path to pipeline: /lustre/nobackup/WUR/ABGC/shared/PIPELINES/whole-genome-alignment == First follow the instructions here: == [https://carolinapb.github.io/2021-06-23-how-to-run-my-pipelines/ Step by st...")
12:06, 9 June 2026 Haars0011 talk contribs deleted page Single Cell preprocessing pipeline (content was: "Author: Carolina Pita Barros Contact: carolina.pitabarros@wur.nl ABG For up-to-date documentation see [https://github.com/CarolinaPB/single-cell-data-processing here] = Single Cell preprocessing pipeline = Path to pipeline: /lustre/nobackup/WUR/ABGC/shared/PIPELINES/single-cell-data-processing =...", and the only contributor was "Moiti001" (talk))
12:06, 9 June 2026 Haars0011 talk contribs deleted page Population variant calling pipeline (content was: "Author: Carolina Pita Barros Contact: carolina.pitabarros@wur.nl ABG For up-to-date documentation see [https://github.com/CarolinaPB/population-variant-calling here] = Population level variant calling = Path to pipeline: /lustre/nobackup/WUR/ABGC/shared/PIPELINES/population-variant-calling == First follow the instructions here == [https://carolinapb.github.io/2021-06-23-how-to-run-my-pipelines/ Ste...")
12:06, 9 June 2026 Haars0011 talk contribs deleted page Nanopore assembly and variant calling (content was: "Author: Carolina Pita Barros Contact: carolina.pitabarros@wur.nl ABG For up-to-date documentation see [https://github.com/CarolinaPB/nanopore-assembly here] = Assemble nanopore reads and do variant calling with short and long reads = Path to pipeline: /lustre/nobackup/WUR/ABGC/shared/PIPELINES/nanopore-assembly == First follow the instructions here:...", and the only contributor was "Moiti001" (talk))
12:06, 9 June 2026 Haars0011 talk contribs deleted page Population mapping pipeline (content was: "Author: Carolina Pita Barros Contact: carolina.pitabarros@wur.nl ABG [https://github.com/CarolinaPB/population-mapping Link to the repository] == First follow the instructions here: == [https://carolinapb.github.io/2021-06-23-how-to-run-my-pipelines/ Step by step guide on how to use my pipelines] Click [https://github.com/CarolinaPB/snakemake-...", and the only contributor was "Moiti001" (talk))
12:06, 9 June 2026 Haars0011 talk contribs deleted page Population structural variant calling pipeline (content was: "Author: Carolina Pita Barros Contact: carolina.pitabarros@wur.nl ABG [https://github.com/CarolinaPB/population-structural-var-calling-smoove/tree/single_run Link to the repository] == First follow the instructions here: == [https://carolinapb.github.io/2021-06-23-how-to-run-my-pipelines/ Step by step guide on how to use my pipelines] Click [https://github.com/CarolinaPB/snakemake-template/blob/master/Short%20introduction%20to%20Snakemake.pdf here...")
12:06, 9 June 2026 Haars0011 talk contribs deleted page Mapping and variant calling pipeline (content was: "Author: Carolina Pita Barros Contact: carolina.pitabarros@wur.nl ABG Path to pipeline: /lustre/nobackup/WUR/ABGC/shared/PIPELINES/mapping-variant-calling [https://github.com/CarolinaPB/WUR_mapping-variant-calling Link to the repository] == First follow the instructions here: == [https://carolinapb.github.io/2021-06-23-how-to-run-my-pipelines/ St...", and the only contributor was "Moiti001" (talk))

Main public logs

Navigation menu

Search