Hmmer 3.1: Difference between revisions
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[http://hmmer.janelia.org HMMER] is used for searching sequence databases for homologs of protein sequences, and for making protein sequence alignments. It implements methods using probabilistic models called profile hidden Markov models (profile HMMs). | |||
== Module file == | == Module file == | ||
| Line 6: | Line 7: | ||
<source lang='tcl'> | <source lang='tcl'> | ||
#%Module1.0####################################################################### | #%Module1.0####################################################################### | ||
## | ## hmmer 3.1 modulefile | ||
## | ## | ||
proc ModulesHelp { } { | proc ModulesHelp { } { | ||
puts stderr "\tAdds | puts stderr "\tAdds hmmer v3.1 to your environment" | ||
} | } | ||
module-whatis "Adds | module-whatis "Adds hmmer v3.1 to your environment" | ||
set | set hmmer_31_root /cm/shared/apps/WUR/ABGC/hmmer/hmmer-3.1b1-linux-intel-x86_64/binaries/ | ||
prepend-path PATH $ | prepend-path PATH $hmmer_31_root | ||
Revision as of 13:51, 21 December 2013
HMMER is used for searching sequence databases for homologs of protein sequences, and for making protein sequence alignments. It implements methods using probabilistic models called profile hidden Markov models (profile HMMs).
Module file
The module file can be found in this location:
/cm/shared/apps/WUR/ABGC/modulefiles
<source lang='tcl'>
- %Module1.0#######################################################################
- hmmer 3.1 modulefile
proc ModulesHelp { } {
puts stderr "\tAdds hmmer v3.1 to your environment"
}
module-whatis "Adds hmmer v3.1 to your environment"
set hmmer_31_root /cm/shared/apps/WUR/ABGC/hmmer/hmmer-3.1b1-linux-intel-x86_64/binaries/
prepend-path PATH $hmmer_31_root
</source>