RAxML8.0.0

RAxML (Randomized Axelerated Maximum Likelihood) is a program for sequential and parallel Maximum Likelihood based inference of large phylogenetic trees. It can also be used for postanalyses of sets of phylogenetic trees, analyses of alignments and, evolutionary placement of short reads.

Module file

The module file can be found in this location:

 /cm/shared/modulefiles/SHARED/

<source lang='tcl'>

1. %Module1.0#######################################################################
   1. RAxML 8.0.0 modulefile

proc ModulesHelp { } {

       puts stderr "\tAdds RAxML8.0.0 to your environment"

}

module-whatis "Adds RAxML8.0.0 to your environment"

set raxml800_root /cm/shared/apps/SHARED/RAxML/RAxML8.0.0

prepend-path PATH $raxml800_root

</source>

Installation details

Compiled from source using the stock gcc 4.4 of Scientific Linux on 15-03-2014:

  https://github.com/stamatak/standard-RAxML

<source lang='bash> make -f Makefile.SSE3.gcc make -f Makefile.SSE3.PTHREADS.gcc make -f Makefile.SSE3.MPI.gcc </source> The file Makefile.SSE3.MPI.gcc has been modified:

  CC = mpicc

The version of openmpi used:

  openmpi/gcc/64/1.6.5

See also

• Globally installed software
• ABGC specific modules

External links

• RAxML GitHub page
• RAxML home page