Provean 1.1.3: Difference between revisions
| Line 3: | Line 3: | ||
== Module file == | == Module file == | ||
The module file can be found in this location: | The module file can be found in this location: | ||
/cm/shared/ | /cm/shared/modulefiles/SHARED/ | ||
<source lang='tcl'> | <source lang='tcl'> | ||
| Line 16: | Line 16: | ||
module-whatis "Adds Provean 1.1.3 to your environment" | module-whatis "Adds Provean 1.1.3 to your environment" | ||
set provean_113_root /cm/shared/apps/ | set provean_113_root /cm/shared/apps/SHARED/provean/provean-1.1.3/bin/ | ||
prepend-path PATH $provean_113_root | prepend-path PATH $provean_113_root | ||
| Line 22: | Line 22: | ||
</source> | </source> | ||
== Installation details == | == Installation details == | ||
Compiled from source. | Compiled from source. | ||
Revision as of 10:03, 15 March 2014
PROVEAN was developed to predict whether a protein sequence variation affects protein function.
Module file
The module file can be found in this location:
/cm/shared/modulefiles/SHARED/
<source lang='tcl'>
- %Module1.0#######################################################################
- Provean 1.1.3 modulefile
proc ModulesHelp { } {
puts stderr "\tAdds Provean 1.1.3 to your environment"
}
module-whatis "Adds Provean 1.1.3 to your environment"
set provean_113_root /cm/shared/apps/SHARED/provean/provean-1.1.3/bin/
prepend-path PATH $provean_113_root
</source>
Installation details
Compiled from source. <source lang='bash'> ./configure --prefix=/cm/shared/apps/WUR/ABGC/provean/provean-1.1.3/ PSIBLAST=/cm/shared/apps/WUR/ABGC/blast/ncbi-blast-2.2.28+/bin/psiblast BLASTDBCMD=/cm/shared/apps/WUR/ABGC/blast/ncbi-blast-2.2.28+/bin/blastdbcmd CDHIT=/cm/shared/apps/WUR/ABGC/cd-hit/cd-hit-v4.6.1-2012-08-27/cd-hit BLAST_DB=/lustre/nobackup/WUR/ABGC/shared/public_data_store/nrdb/nrdb_241213/nr make make install </source>
See also
- Globally installed software
- ABGC specific modules
- Mapping all known Sus scrofa variants with Provean