Hmmer 3.1: Difference between revisions
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== Module file == | == Module file == | ||
The module file can be found in this location: | The module file can be found in this location: | ||
/cm/shared/ | /cm/shared/modulefiles/SHARED/ | ||
<source lang='tcl'> | <source lang='tcl'> | ||
| Line 16: | Line 16: | ||
module-whatis "Adds hmmer v3.1 to your environment" | module-whatis "Adds hmmer v3.1 to your environment" | ||
set hmmer_31_root /cm/shared/apps/ | set hmmer_31_root /cm/shared/apps/SHARED/hmmer/hmmer-3.1b1-linux-intel-x86_64/binaries/ | ||
prepend-path PATH $hmmer_31_root | prepend-path PATH $hmmer_31_root | ||
</source> | </source> | ||
== Installation details == | == Installation details == | ||
Downloaded as pre-compiled binaries from the [ftp://selab.janelia.org/pub/software/hmmer3/3.1b1/hmmer-3.1b1-linux-intel-x86_64.tar.gz hmmer website]. | Downloaded as pre-compiled binaries from the [ftp://selab.janelia.org/pub/software/hmmer3/3.1b1/hmmer-3.1b1-linux-intel-x86_64.tar.gz hmmer website]. | ||
Latest revision as of 10:00, 15 March 2014
HMMER is used for searching sequence databases for homologs of protein sequences, and for making protein sequence alignments. It implements methods using probabilistic models called profile hidden Markov models (profile HMMs).
Module file
The module file can be found in this location:
/cm/shared/modulefiles/SHARED/
<source lang='tcl'>
- %Module1.0#######################################################################
- hmmer 3.1 modulefile
proc ModulesHelp { } {
puts stderr "\tAdds hmmer v3.1 to your environment"
}
module-whatis "Adds hmmer v3.1 to your environment"
set hmmer_31_root /cm/shared/apps/SHARED/hmmer/hmmer-3.1b1-linux-intel-x86_64/binaries/
prepend-path PATH $hmmer_31_root </source>
Installation details
Downloaded as pre-compiled binaries from the hmmer website.