Hmmer 3.1: Difference between revisions
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== External links == | == External links == | ||
* [http:// | * [http://hmmer.janelia.org hmmer website] | ||
Revision as of 14:52, 21 December 2013
HMMER is used for searching sequence databases for homologs of protein sequences, and for making protein sequence alignments. It implements methods using probabilistic models called profile hidden Markov models (profile HMMs).
Module file
The module file can be found in this location:
/cm/shared/apps/WUR/ABGC/modulefiles
#%Module1.0#######################################################################
## hmmer 3.1 modulefile
##
proc ModulesHelp { } {
puts stderr "\tAdds hmmer v3.1 to your environment"
}
module-whatis "Adds hmmer v3.1 to your environment"
set hmmer_31_root /cm/shared/apps/WUR/ABGC/hmmer/hmmer-3.1b1-linux-intel-x86_64/binaries/
prepend-path PATH $hmmer_31_root