Snap: Difference between revisions
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== Module file == | == Module file == | ||
The module file can be found in this location: | The module file can be found in this location: | ||
/cm/shared/ | /cm/shared/modulefiles/SHARED/ | ||
<source lang='tcl'> | <source lang='tcl'> | ||
| Line 17: | Line 17: | ||
setenv ZOE /cm/shared/apps/ | setenv ZOE /cm/shared/apps/SHARED/snap/snap-2013-11-29/Zoe | ||
set snap_20131129_root /cm/shared/apps/ | set snap_20131129_root /cm/shared/apps/SHARED/snap/snap-2013-11-29 | ||
prepend-path PATH $snap_20131129_root | prepend-path PATH $snap_20131129_root | ||
Revision as of 10:14, 15 March 2014
SNAP is a general purpose gene finding program suitable for both eukaryotic and prokaryotic genomes. SNAP is an acroynm for Semi-HMM-based Nucleic Acid Parser.
Module file
The module file can be found in this location:
/cm/shared/modulefiles/SHARED/
<source lang='tcl'>
- %Module1.0#######################################################################
- snap 2013-11-29 modulefile
proc ModulesHelp { } {
puts stderr "\tAdds snap 2013-11-29 to your environment"
}
module-whatis "Adds snap 2013-11-29 to your environment"
setenv ZOE /cm/shared/apps/SHARED/snap/snap-2013-11-29/Zoe
set snap_20131129_root /cm/shared/apps/SHARED/snap/snap-2013-11-29
prepend-path PATH $snap_20131129_root
</source>
Installation details
Compiled from source using gcc 4.8.
Further details
The package includes a bunch of pre-made hmm profiles:
/cm/shared/apps/WUR/ABGC/snap/snap-2013-11-29/HMM/