Augustus 2.7: Difference between revisions
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(Created page with "Augustus is a gene prediction/annotation pipeline. == Module file == The module file can be found in this location: /cm/shared/apps/WUR/ABGC/modulefiles <source lang='tcl'...") |
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"AUGUSTUS is a gene prediction program for eukaryotes genomic sequences. It can be used as an ab initio program, which means it bases its prediction purely on the sequence. AUGUSTUS may also incorporate hints on the gene structure coming from extrinsic sources such as EST, MS/MS, protein alignments and synthenic genomic alignments." | |||
== Module file == | == Module file == | ||
Revision as of 13:06, 21 December 2013
"AUGUSTUS is a gene prediction program for eukaryotes genomic sequences. It can be used as an ab initio program, which means it bases its prediction purely on the sequence. AUGUSTUS may also incorporate hints on the gene structure coming from extrinsic sources such as EST, MS/MS, protein alignments and synthenic genomic alignments."
Module file
The module file can be found in this location:
/cm/shared/apps/WUR/ABGC/modulefiles
<source lang='tcl'>
- %Module1.0#######################################################################
- augustus 2.7 modulefile
proc ModulesHelp { } {
puts stderr "\tAdds augustus 2.7 to your environment"
}
module-whatis "Adds augustus 2.7 to your environment"
setenv AUGUSTUS_CONFIG_PATH /cm/shared/apps/WUR/ABGC/augustus/augustus.2.7/config
set augustus_27_root /cm/shared/apps/WUR/ABGC/augustus/augustus.2.7/src
prepend-path PATH $augustus_27_root
</source>