Blat v35: Difference between revisions
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The module file can be found in this location: | The module file can be found in this location: | ||
/cm/shared/apps/WUR/ABGC/modulefiles | /cm/shared/apps/WUR/ABGC/modulefiles | ||
The entire suite of binaries/executable was downloaded on 20-12-2013: | |||
<source lang='bash'> | |||
rsync -aP rsync://hgdownload.cse.ucsc.edu/genome/admin/exe/linux.x86_64/ . | |||
</source> | |||
<source lang='tcl'> | <source lang='tcl'> | ||
Revision as of 23:59, 20 December 2013
BLAT (BLAST-like alignment tool) is a pairwise sequence alignment algorithm that was developed by Jim Kent at the University of California Santa Cruz (UCSC) in the early 2000s to assist in the assembly and annotation of the Human Genome.
Module file
The module file can be found in this location:
/cm/shared/apps/WUR/ABGC/modulefiles
The entire suite of binaries/executable was downloaded on 20-12-2013:
rsync -aP rsync://hgdownload.cse.ucsc.edu/genome/admin/exe/linux.x86_64/ .
#%Module1.0#######################################################################
## blat suite (v35) plus tools (2013-20-12 download) modulefile
##
proc ModulesHelp { } {
puts stderr "\tAdds the entire blat suite (v35) including blat tools (2013-20-12 download) to your environment"
}
module-whatis "Adds the entire blat suite (v35) including blat tools (2013-20-12 download) to your environment"
set blat_root /cm/shared/apps/WUR/ABGC/blat/blat-v35/blat
set blat_tools_root /cm/shared/apps/WUR/ABGC/blat/blat-v35
prepend-path PATH $blat_tools_root
prepend-path PATH $blat_root